Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq16708 143 2e-29 >seq16708 Length=1145218 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| ||||| || | |||||||| || ||||||||||| || | Sbjct 654043 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAC 654102 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| ||||| || |||||| | || | |||||||||||| ||||| Sbjct 654103 AAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGA 654162 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||||| ||| || | |||| ||||| | | ||||| Sbjct 654163 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACT 654222 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || ||||| ||||| ||||||||||| Sbjct 654223 TCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| ||||| || | |||||||| || |||||||||||||| Sbjct 654271 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAT 654330 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| || || || |||||| |||| | |||||||||||| ||||| Sbjct 654331 AGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654390 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || |||||||| || ||||| ||| || | ||||| || || | ||| ||||| Sbjct 654391 ATTCCCTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCT-TCGAC 654449 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || ||||| ||||| ||||||||||| Sbjct 654450 TTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654497 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| ||||| || | ||||| ||||| |||||||||||||| Sbjct 654727 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGAT 654786 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| || || || |||||| |||| | |||||||||||| ||||| Sbjct 654787 AGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654846 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || |||||||| || ||||| ||| || | ||||| || || | ||| ||||| Sbjct 654847 ATTCCCTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCT-TCGAC 654905 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || ||||| ||||| ||||||||||| Sbjct 654906 TTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654953 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | ||||| |||| || | || ||||| ||||| ||||||||||| Sbjct 653814 ACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 653873 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || |||||| | ||| || |||||| |||| | |||||||||||| ||||| Sbjct 653874 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 653933 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || ||||||||||| ||||| ||| || | |||| ||||| | | ||||| Sbjct 653934 AATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 653993 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || ||||| ||||| ||||||||||| Sbjct 653994 TTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| |||| || | || ||||| ||||| ||||||||||| Sbjct 654499 CCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 654558 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| | ||| || |||||| |||| | |||||||||||| ||||| Sbjct 654559 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654618 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| ||||| ||| || | |||| ||||| | | ||||| Sbjct 654619 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACT 654678 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||| || || ||||| ||||| ||||||||||| Sbjct 654679 TCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654725 Score = 129 bits (142), Expect = 5e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | ||||| |||| || | || ||||| ||||| ||||||||||| Sbjct 654955 CCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAG 655014 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || |||||| || || || |||||| |||| | |||||||||||| ||||| Sbjct 655015 AGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 655074 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || ||||| || ||||| ||| || | ||||| ||||| | ||| ||||| Sbjct 655075 ATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCT-TCGAC 655133 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || | ||| | ||||| || || ||||| || ||||| |||||||||| Sbjct 655134 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATGG 655183 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || ||||| |||||| | || | ||| ||||| ||||||||| Sbjct 1010135 GTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTTCCATCTTCGAGTTGTTTTCCA 1010194 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | || || || || ||||| || || || ||||| |||||| || Sbjct 1010195 GCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTG 1010254 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | ||| ||||||| ||| | ||||||||| |||| || Sbjct 1010255 ACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTTATCGTTTTGCCTGTCAACGTC 1010314 Query 118722 TTTACAAAAATCTGCAT 118738 ||||||||||||||||| Sbjct 1010315 TTTACAAAAATCTGCAT 1010331 Score = 111 bits (122), Expect = 1e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || |||||||| || |||||||| | |||| |||| ||| ||||| ||||||| Sbjct 1010819 GTGGATTCTTTTTGTATATTGTAATCAG--AGAGTGTGCGTCCATCTTCGAGTTGTTTTC 1010876 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| |||| || || || || || ||||| || || || |||||| ||| || | Sbjct 1010877 CAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCT 1010936 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||| | || || | ||| ||||||| ||| | ||| ||||| |||| | Sbjct 1010937 TGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTCAACG 1010996 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || |||||||||||||| Sbjct 1010997 TCTTGACAAAAATCTGCAT 1011015 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || |||||||| | |||||| ||| ||||| ||||||||| Sbjct 1010363 GTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGCCCATCTTCGAGTTGTTTTCCA 1010422 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || || || || || |||||||| ||||| ||||| ||| || || Sbjct 1010423 GCGAAGATCAGTCGTTGTTGGTCCGGAGGTATTCCCTCTTTGTCCTGAATCTTGGCCTTG 1010482 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || || | ||| ||||||| ||| | ||| ||||| |||| || Sbjct 1010483 ACATTCTCGATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTCAATGTC 1010542 Query 118722 TTTACAAAAATCTGCAT 118738 || |||||||||||||| Sbjct 1010543 TTGACAAAAATCTGCAT 1010559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || ||||| || || ||||| ||||| | |||| |||| ||| || | ||| |||| Sbjct 1009907 GTCGACTCCTTCTGGATGTTATAATCAG--AAAGTGTGCGTCCATCTTCTAACTGCTTTC 1009964 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| |||| | | ||||| || || || || || || |||||| |||||| || Sbjct 1009965 CAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCTTCTTTGTCTTGAATTTTAGCTT 1010024 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | ||||| ||| || | |||||| || | || | || || || ||||||| Sbjct 1010025 TCACATTTTCGATGGTATCGGACGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAGAG 1010084 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || |||||||||||||| Sbjct 1010085 TCTTAACAAAAATCTGCAT 1010103 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || || || || || |||||||| | |||| |||| ||| ||||| ||||||| Sbjct 1011047 GTGGATTCCTTCTGTATATTGTAATCAG--AGAGTGTGCGTCCATCTTCGAGTTGTTTTC 1011104 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 ||||| |||| | || || || || ||||| || || || ||||| |||||| | Sbjct 1011105 CAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCT 1011164 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || | || || | ||| ||||||| ||| | ||| || || |||| || Sbjct 1011165 TGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTTCCAGTCAAAG 1011224 Query 118720 TTTTTACAAAAATCTGCAT 118738 | || |||||||||||||| Sbjct 1011225 TCTTGACAAAAATCTGCAT 1011243 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCTCGAGCTGTTTTC 118599 || || || || || || |||||||| | |||| |||| |||||| ||||| |||| Sbjct 1010591 GTGGATTCCTTCTGTATATTGTAATCAG--AGAGTGTGCGTCCATCCTCCAGCTGCTTTC 1010648 Query 118600 CAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTT 118659 | || |||| | || || ||||| |||||||| ||||| ||||| |||||| | Sbjct 1010649 CGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTGTCCTGAATTTTGGCCT 1010708 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || | || || | |||||| || | || | || || || |||| | Sbjct 1010709 TGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAACG 1010768 Query 118720 TTTTTACAAAAATCTGCAT 118738 |||| |||||||||||||| Sbjct 1010769 TTTTCACAAAAATCTGCAT 1010787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433563031409056