Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq16708 118 1e-21 seq12201 105 8e-18 seq19759 102 9e-17 seq17254 102 9e-17 seq32564 100 3e-16 seq38424 98.7 1e-15 seq48457 89.7 6e-13 >seq16708 Length=1145218 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | | || |||| ||| | ||| ||||||||| || |||||||||| Sbjct 653815 CCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 653874 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || |||| |||||| |||||||| || | |||||||| || | || Sbjct 653875 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 653934 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||||| |||||| ||| | || | | |||||| | ||| || Sbjct 653935 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACT 653994 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| || || || |||||||| || || |||||| Sbjct 653995 TCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| | ||| ||||||||| || |||||||||| ||||| || | || ||| Sbjct 654517 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654576 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 | |||||| |||||||| || | |||||||| || | || | | |||||||||| | Sbjct 654577 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654636 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| ||| | || | | |||||| | ||| || || | ||||||||||| Sbjct 654637 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654696 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || |||||||| || || |||||| Sbjct 654697 CCTGTGAGAGTCTTTACGAAAATCTGCATT 654726 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | || |||||| ||||| ||||| || | || ||| || | || || Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| |||||||| || | |||||||| || | || | | |||||||||| | Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| ||| | || | | |||||| | ||| || || | ||||||||||| Sbjct 654181 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654240 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || || |||||||| || || |||||| Sbjct 654241 CCTGTGAGAGTCTTTACGAAAATCTGCATT 654270 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| | ||| ||||||||| || |||||||||| ||||| || | || ||| Sbjct 654973 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAGAGAGTACGTCCATCCTCT 655032 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| |||||||| || | |||||||| || | || | | ||||| ||| | Sbjct 655033 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 655092 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| ||| | | | | |||||| | ||| || || | ||||||||||| Sbjct 655093 ATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTTTTC 655152 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| |||||||| ||||| Sbjct 655153 CCTGTGAGAGTCTTGACAAAGATCTGCAT 655181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| | || | |||| ||| | ||| ||||| || ||||||||||||| Sbjct 1010332 TCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGA 1010391 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || ||| | || || || || || |||||||| || ||||| || ||||| | || Sbjct 1010392 GAGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGG 1010451 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | ||| |||||| ||| | || | |||| || | | ||| ||| | || | Sbjct 1010452 TATTCCCTCTTTGTCC-TGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAA 1010510 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | |||| || || || ||||| || | ||||| ||||| || |||||| Sbjct 1010511 CCTCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCATT 1010560 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| | || | |||| ||| | ||| ||||| || ||||||||||||| Sbjct 1011244 TCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGA 1011303 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || || || || |||||||| || | ||| || ||||| | || Sbjct 1011304 GAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGG 1011363 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | || |||||| ||| |||| | |||| || | | ||| ||| | || | Sbjct 1011364 AATTCCTTCTTTGTCC-TGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAA 1011422 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | |||| || || || ||||| |||| |||||| || ||||| ||||| Sbjct 1011423 CCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 >seq12201 Length=3704 Score = 105 bits (116), Expect = 8e-18 Identities = 78/89 (88%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 60057 AAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 2456 AAAAATTAATTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 2515 Query 60115 ACTCACCACTATACTACCGAGGA-TTGAA 60142 ||| |||||||||||||||| || ||||| Sbjct 2516 ACTGACCACTATACTACCGAAGACTTGAA 2544 >seq19759 Length=438261 Score = 102 bits (112), Expect = 9e-17 Identities = 80/94 (85%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 60054 ATGAAAAATT---TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 || ||||||| ||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 201209 ATCAAAAATTAAATTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 201268 Query 60111 ACATACTCACCACTATACTACCGAGGA--TTGAA 60142 ||||| |||||||||||||||| || ||||| Sbjct 201269 GGATACTTACCACTATACTACCGAAGAAGTTGAA 201302 >seq17254 Length=298303 Score = 102 bits (112), Expect = 9e-17 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 55813 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 55872 Query 60124 TATACTACCG-AGGATTGAATATATAACTTGAATATTACAA 60163 |||||||||| || |||||| | || | ||||||| || Sbjct 55873 TATACTACCGAAGAATTGAAAACGTATTTCTAATATTATAA 55913 >seq32564 Length=387822 Score = 100 bits (110), Expect = 3e-16 Identities = 70/79 (89%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||||| ||||| ||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 325585 AAATTCTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 325642 Query 60119 ACCACTATACTACCGAGGA 60137 |||||||||||||||| || Sbjct 325643 ACCACTATACTACCGAAGA 325661 >seq38424 Length=212 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 ||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 2 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 61 Query 60124 TATACTACCGAGGA 60137 ||||||||||| || Sbjct 62 TATACTACCGAAGA 75 >seq48457 Length=917100 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT-CACCACT 60124 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| || Sbjct 481872 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAACCGCT 481813 Query 60125 ATACTACCGAGGATTG 60140 |||||| ||||||||| Sbjct 481812 ATACTATCGAGGATTG 481797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571456154095040