Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq16708 116 5e-21 seq36416 105 1e-17 >seq16708 Length=1145218 Score = 116 bits (128), Expect = 5e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| |||| || |||| ||| | || || ||||| || |||||||| | Sbjct 1010103 TTCCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGG 1010162 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||| ||||| | ||| || | |||||||||||| || ||||||| ||| || ||||||| Sbjct 1010163 AAAGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAG 1010222 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| || || Sbjct 1010223 GAATTCCTTCTTTGTCCTG 1010241 Score = 113 bits (124), Expect = 7e-20 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| | |||||||| | |||||||||||| || || ||||| | Sbjct 654725 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAG 654784 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||||| | ||| |||| ||| || ||||| || ||||| | |||||||| |||| Sbjct 654785 ATAGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654844 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| || ||||| || ||||||||| ||| | Sbjct 654845 GAATTCCCTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGA 654904 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| ||||| ||||| | || || | ||| || |||||| Sbjct 654905 CTTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654954 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||||| ||| | | ||| | ||| | ||| |||||||| |||||| ||||| | Sbjct 1010787 TTCCACCTCGAAGGCGGAGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAG 1010846 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | |||||||||||| || |||| || ||| || ||||||| Sbjct 1010847 AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAG 1010906 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| ||||| Sbjct 1010907 GAATTCCTTCTTTGTCTTG 1010925 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| |||| || |||| ||| | ||| ||||| || |||||| ||||| | Sbjct 1011243 TTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAG 1011302 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | |||||||||||| || ||||||| ||| || ||||||| Sbjct 1011303 AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAG 1011362 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| || || Sbjct 1011363 GAATTCCTTCTTTGTCCTG 1011381 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| | || || |||| ||| | ||| ||||| || |||||| ||||| | Sbjct 1011015 TTCCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAG 1011074 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | |||||||||||| || ||||||| ||| || ||||||| Sbjct 1011075 AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAG 1011134 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| || || Sbjct 1011135 GAATTCCTTCTTTGTCCTG 1011153 Score = 104 bits (114), Expect = 3e-17 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| | |||||||| | |||||| || || || || ||||| | Sbjct 654269 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAG 654328 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||||| | ||| |||| ||| || ||||| || ||||| | |||||||| |||| Sbjct 654329 ATAGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654388 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 ||||||| || ||||| || ||||||||| ||| | Sbjct 654389 GAATTCCCTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGA 654448 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| || ||||| ||||| ||||| | || || | ||| || |||||| Sbjct 654449 CTTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654498 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| ||||| || | | ||| ||||| || |||||||| || ||||||||| Sbjct 1009922 ATGTTATAATCAGAAAGTGTGCGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTT 1009981 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| ||||| |||||||||||||| ||||| Sbjct 1009982 TGCTGGTCCGGTGGAATTCCTTCTTTGTCTTG 1010013 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| ||||| |||| || |||| ||| | ||| ||||| || |||||| ||||| | Sbjct 1010331 TTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAG 1010390 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | |||||||||||| || |||| || ||| || ||||||| Sbjct 1010391 AGAGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAG 1010450 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||| ||||| || || Sbjct 1010451 GTATTCCCTCTTTGTCCTG 1010469 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | || || |||| ||| | ||| ||||| || |||||| ||||| | Sbjct 1010559 TTCCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAG 1010618 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || | | ||| || | || ||||| ||||| || |||| ||| |||||||||| Sbjct 1010619 AGAGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAG 1010678 Query 146169 GAATTCCTTCTTTATCTTG 146187 | ||||| ||||| || || Sbjct 1010679 GTATTCCCTCTTTGTCCTG 1010697 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | |||||| | |||| ||| | || || || || || || ||||| | Sbjct 654953 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 655012 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||||| | | ||| |||| ||| || ||||| || ||||| | |||||||| |||| Sbjct 655013 AGAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 655072 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 655073 GAATTCCTTCCTTATCCTG 655091 >seq36416 Length=241146 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | | ||| ||||||||||| || || || || || |||||||| || Sbjct 80654 CCGCCTCTCAAGCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGGAC 80595 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || |||||||| || |||||||||| |||||| ||||| || ||| Sbjct 80594 AGAGTTCTCCCATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGGGTGGA 80535 Query 146171 ATTCCT 146176 |||||| Sbjct 80534 ATTCCT 80529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743056416962560