Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 118 7e-22
>seq16708
Length=1145218
Score = 118 bits (130), Expect = 7e-22
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || ||||| |||| || | |||| || ||||| ||||||||||| ||
Sbjct 654042 TCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGA 654101
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| | || |||| ||||||||| |||||||| | |||||||| || ||
Sbjct 654102 CAAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGG 654161
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| | ||||||||| || ||| ||||| | || | |||| || | | |||||
Sbjct 654162 AATTCCCTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGA 654220
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||||||||| || |||||||| || || || ||||||||
Sbjct 654221 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269
Score = 95.1 bits (104), Expect = 8e-15
Identities = 164/236 (69%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 34155 CGTCGAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGT 34214
|||| | || || || || ||||| ||||| || | || || || || |||||||
Sbjct 653807 CGTCCACACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGT 653866
Query 34215 AGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT 34274
| || || || || | || || ||||||||||| ||||| || | |||||||| |
Sbjct 653867 AATCAGATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGAT 653926
Query 34275 CGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTC 34333
| || | | ||||||||| || ||| ||||| | || | |||| || |
Sbjct 653927 CAGGAGGAATTCCCTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAG 653985
Query 34334 GATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||||| |||| ||||||||||| || |||||||| || || || ||||||||
Sbjct 653986 GCTTCGACTTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || ||||| ||||| || | || || || || |||||||| || ||
Sbjct 654498 TCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 654557
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || | || || ||||||||||| ||||| || | |||||||| || ||
Sbjct 654558 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 654617
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| | ||||||||| || ||| ||||| | || | |||| || | | |||||
Sbjct 654618 AATTCCCTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGA 654676
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||||||||| || |||||||| || || || ||||||||
Sbjct 654677 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654725
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || ||||| ||||| || | || || || || |||||||| || ||
Sbjct 654954 TCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 655013
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| ||| | || || | |||||||| ||||| || | |||||||| || ||
Sbjct 655014 GAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 655073
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| | ||||| || || ||| ||||| | | | |||| || | | |||||
Sbjct 655074 AATTCCTTCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGA 655132
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||||||||| || |||||||| || ||||||||||||||
Sbjct 655133 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 655181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322872891534080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |