Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq16708 122 7e-23 seq21718 96.9 3e-15 seq27945 93.3 3e-14 >seq16708 Length=1145218 Score = 122 bits (134), Expect = 7e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||||||||| || |||| || || ||| |||||||| || ||||| || Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || ||||||||||| ||||| ||||| || |||||||| ||||| Sbjct 1011077 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011136 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| |||||| ||| || | | | | || | |||| ||| Sbjct 1011137 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011196 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || | ||| |||||||| || |||| |||||| ||||| || ||||| ||||| Sbjct 1011197 TCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCATTCCGCCTC 1011251 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| || || |||| || || ||| |||||||| || ||||| || Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || ||||||||||| ||||| ||||| || |||||||| ||||| Sbjct 1011305 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011364 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| |||||| ||| || | | | | || | |||| ||| Sbjct 1011365 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011424 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || | ||| ||||||||||| || | ||||| || ||||| |||||| Sbjct 1011425 TCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCATG 1011472 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| || || |||| || || ||| |||||||| || ||||| || Sbjct 1010333 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010392 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || ||||||||||| ||||| |||| || |||||||| ||||| Sbjct 1010393 AGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGT 1010452 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| |||||| ||| || ||| || | | | | || | |||| ||| Sbjct 1010453 ATTCCCTCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAACC 1010512 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| ||||||||||| |||| ||||| ||||| || ||||| Sbjct 1010513 TCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCAT 1010559 Score = 104 bits (114), Expect = 2e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| || || |||| || || || ||| ||||| ||||| || ||| Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | | || || ||||||||||| ||||| ||||| || |||||||| ||||| Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || || |||||| |||||| ||| || | | | |||| | |||| ||| Sbjct 1010225 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACC 1010284 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCTC 45344 || | ||| ||||| ||||| |||| ||||| ||||| || ||||| ||||| Sbjct 1010285 TCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCATTCCGCCTC 1010339 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||||| || |||| || || ||| |||||||| || ||||| || Sbjct 1010561 CCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010620 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || ||||| || |||||||| || || || || ||||| || ||||| Sbjct 1010621 AGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGT 1010680 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| |||||| |||||| ||| || | | | | || | |||| || Sbjct 1010681 ATTCCCTCTTTGTCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACT 1010740 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| || || ||||| || |||| || |||||||| || ||||| Sbjct 1010741 TCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 1010787 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||||||||||||||| || || | || ||| Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || ||||| ||||| ||||| || || ||||| | |||||||||||| Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| | || || |||| ||| || || || Sbjct 654181 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654240 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || |||||||| || || || ||||| Sbjct 654241 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654269 >seq21718 Length=958615 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45149 TTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATC 45208 ||||||||||| || ||| || ||| | || |||| ||| ||||| || || ||| Sbjct 51083 TTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGATC 51142 Query 45209 AACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCC 45268 || |||||||| ||||| || | ||||| ||||| ||| ||| || || | | Sbjct 51143 AAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCTCG 51202 Query 45269 ACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAG 45328 | |||| | |||| ||||| | ||||||||| || |||||||| || ||||| || Sbjct 51203 ATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGAAT 51262 Query 45329 ATTTGCAT 45336 || ||||| Sbjct 51263 ATCTGCAT 51270 >seq27945 Length=413252 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 13245 GAGCAGATGGCGGATGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTC 13304 ||||| | || ||||| ||||||| || ||||| | ||||| | || ||||| Sbjct 170101 GAGCAATTAGCAGATGCTGGTTTCTATTATACTGGACAGGGTGATCAAACTTTGTGCTAT 170042 Query 13305 TATTGTGACGGCGGATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATGTA 13364 ||||||| ||| || || || ||||||||||| ||||||| || |||||||| |||| | Sbjct 170041 TATTGTGGCGGAGGTTTAAAGGATTGGGAGCCAGAAGATGATCCGTGGGAACAACATGCA 169982 Query 13365 AGATGGTTC 13373 | ||||||| Sbjct 169981 AAATGGTTC 169973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394831716141928