Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq16708 84.2 2e-11 >seq16708 Length=1145218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| || |||| ||||| || || ||||| || ||||| || |||| | ||| | Sbjct 1010114 AGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTT 1010173 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||| | |||||| || || |||| | || |||||| ||| || | ||||| Sbjct 1010174 CCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCT 1010233 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 || || ||||| |||||| | | | ||||| | ||| || | ||| Sbjct 1010234 TTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTT 1010293 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||||| ||||| || ||||||||||| |||||| Sbjct 1010294 ATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCATT 1010332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379110211241160