Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10733 105 8e-18 seq48246 93.3 5e-14 >seq10733 Length=171697 Score = 105 bits (116), Expect = 8e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 62375 ATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62434 ||| || ||||| ||||| || ||||| ||||| ||||| | || |||||||| |||| Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751 Query 62435 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62494 ||| ||||| | || ||||||||||| | || || || || || || || |||||||| Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811 Query 62495 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATG-TTCCC 62553 || | | ||| ||| |||| |||| | | ||| || ||||| | ||| | ||| Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCA-ATGCTGCCC 125870 Query 62554 AATTCCAAAGATCCG 62568 ||| ||| | ||||| Sbjct 125871 AATCCCATAAATCCG 125885 Score = 102 bits (112), Expect = 1e-16 Identities = 217/315 (69%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 || || ||||||||||||||||| | ||| | | |||||| | |||||| ||||| || Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || | || | |||| || | || |||||||| ||||| | |||| ||| || || Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 ||||| |||| | ||| |||| | ||| || |||| |||| || | | || | | Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTAT-TGG 126812 Query 63513 CCT-CCACTGGCACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63569 | || || || | ||| | || |||| || || || || || || |||| Sbjct 126813 TGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACTA 126870 Query 63570 ATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTT 63628 || | ||| |||| |||||| || ||||| || |||| || ||||| || ||| |||| Sbjct 126871 ATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGTT 126930 Query 63629 AAGTAGAAAACAGCT 63643 || |||||||| || Sbjct 126931 AA-CAGAAAACAACT 126944 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 62926 TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCG 62985 |||||||||| || | |||| || |||| ||| || ||||| || |||| | | | Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136 Query 62986 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 63045 |||||||| || || || || | |||||| || || || ||||||| |||||| |||| Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196 Query 63046 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63105 | || ||| || |||||||||||| || || ||||| || ||||||| || | Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256 Query 63106 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC 63165 | | || ||| |||| | | | | || | ||| ||||||||| |||||| Sbjct 126257 CAACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCT--TTTCTC 126314 Query 63166 --TTTCGTAT 63173 |||||||| Sbjct 126315 ATTTTCGTAT 126324 Score = 86.0 bits (94), Expect = 8e-12 Identities = 120/166 (72%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 63176 AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 |||||||| ||| || || || |||||||||| | || | |||| |||||| || Sbjct 126396 AGTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGG 126455 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295 |||||| || ||| | || | || |||||||||||||| |||||||| | ||| Sbjct 126456 ACACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCA 126515 Query 63296 AAGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 | | | || |||| ||||||| ||||||||||| || ||||| Sbjct 126516 TA-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560 >seq48246 Length=3565318 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 ||||||| | ||||||||||||||| ||||| || || || ||||| ||||||||||| | Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 34126 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| |||||| | | || || || || | ||||||||| || || || Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTT 2532616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629419492295040