Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10733 136 4e-27 seq48246 102 8e-17 >seq10733 Length=171697 Score = 136 bits (150), Expect = 4e-27 Identities = 180/246 (73%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 |||| || | ||||| || ||||| || || ||||| ||||| || || |||||||||| Sbjct 125676 TTAGATCCCGCAATAAATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTG 125735 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 |||| |||||| | ||||||||||| || || |||||||| | || || || | ||||| Sbjct 125736 TATAAATATTGTTGGTATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAG 125795 Query 37229 ATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCT 37288 | || || ||||| || || ||||| | ||| || | ||| ||| || || | | Sbjct 125796 ACGCTGTTGGCATAGGCGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTT 125855 Query 37289 TTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATATCATATTG 37346 ||| | | | ||||||||||||||| || || || | || ||||||||| ||||| Sbjct 125856 CTTTCAATGCTGCCCAATCCCATAAATCCGTAGGCGTAACATT--CCACATATCGTATTG 125913 Query 37347 TAGAAT 37352 | ||| Sbjct 125914 CAAAAT 125919 Score = 125 bits (138), Expect = 7e-24 Identities = 214/305 (70%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 38091 ATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCG 38149 ||||||| ||||| | || || ||||| ||||| || ||||||||||||| ||| | | Sbjct 126642 ATTCTTT-TTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAATACAAAG 126700 Query 38150 ACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATA 38209 | |||||||||||| |||| ||||| |||| || ||||| | |||| || ||||||| Sbjct 126701 CAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTGTTATATA 126760 Query 38210 TTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCT 38269 || | |||||| || | |||||| ||| || | | | ||| |||||| Sbjct 126761 CTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTATTGGTGTACCCC 126820 Query 38270 TAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCG 38328 |||||| |||| | || | ||| || ||||| || || ||| | || | || Sbjct 126821 TAGCTCTTATACAATGTACATTGAGTCCAATACCACCAGC-TGATTTACTAATGAGTGCA 126879 Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388 ||| |||||| |||||| | || |||| ||||| || || | |||| || | |||| Sbjct 126880 CATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGTTAACAGAAAA 126939 Query 38389 CAACT 38393 ||||| Sbjct 126940 CAACT 126944 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766 ||| ||||| ||||||||||| || | |||||| ||| || ||||| | |||||| Sbjct 126108 ATTGCATACGGCAACTTCATCCGGACTAGAATATTGTACAATTTCCGTACACAAATTACT 126167 Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826 || |||||||||| | ||| ||||| ||||| || ||| ||| ||||| || Sbjct 126168 GCATTTAATTGTTCCTATATTTTGATGATTCGATTTACGGTTGCAATGATCCTTATAAAG 126227 Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAA 37877 ||| | || |||||| ||| | ||| || | | |||| | ||||||| Sbjct 126228 CATAAAAGGAGTTCCTGTTTCAACTTGGGCAACAAGTATAGCTGTCCATAA 126278 >seq48246 Length=3565318 Score = 102 bits (112), Expect = 8e-17 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959 ||||| || |||||||| ||||||||||| || | || ||||| |||| |||||| Sbjct 2532217 TATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGAAAG 2532276 Query 11960 CCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| |||||||||| ||| || || || ||||| ||| | | ||| Sbjct 2532277 CCATAGAAACAGCGTGCCTCTG-TCACTTGAACTTCTTGGCTAAATCGTTCTACGAGATT 2532335 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||| || ||||| || | || || ||||||| || || |||||||| ||| Sbjct 2532336 CTCATTAACGATACCGTCGGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGTGTTT 2532395 Query 12079 TTCGTCTTTAG-TTAATTTATCCCAATCA 12106 ||| || | |||| ||||||| ||| Sbjct 2532396 CTCG-CTAGCGTTTAAAATATCCCAGTCA 2532423 Score = 93.3 bits (102), Expect = 4e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||| ||||||| |||| | ||||||||| || |||||||| || ||||| || Sbjct 2531613 ACCTTTTGGCAACCTAGCTCTAAGAGTAATCTATCCGCTACGAATTCGATGTACTGGCAC 2531672 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 |||| ||| ||||| || || | || || || | |||| | ||||||||||| | | Sbjct 2531673 ATTAGTTTACAGTTCATGCCAATCATTTCAACAGGCAAAGCATCCGTCAAAAACTCTTGT 2531732 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611 || || | || |||| | || |||||||| | ||| ||| || || | Sbjct 2531733 TCAATTTCGACTGCATTCTTTATGATCGACGTAACTCGTTCGCAAGACGGCTTTTGCACG 2531792 Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | || || ||||||| || || ||||| ||||| ||||| Sbjct 2531793 ATGTGCTTGAACATTAGGCAAGCGAAATCGCAATGCAAACC 2531833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468228645473920