Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 136 4e-27
seq48246 102 8e-17
>seq10733
Length=171697
Score = 136 bits (150), Expect = 4e-27
Identities = 180/246 (73%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168
|||| || | ||||| || ||||| || || ||||| ||||| || || ||||||||||
Sbjct 125676 TTAGATCCCGCAATAAATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTG 125735
Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228
|||| |||||| | ||||||||||| || || |||||||| | || || || | |||||
Sbjct 125736 TATAAATATTGTTGGTATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAG 125795
Query 37229 ATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCT 37288
| || || ||||| || || ||||| | ||| || | ||| ||| || || | |
Sbjct 125796 ACGCTGTTGGCATAGGCGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTT 125855
Query 37289 TTTTTAGTTCATTCCAATCCCATAAATCTGTTGG-GT-TCTTTAACCACATATCATATTG 37346
||| | | | ||||||||||||||| || || || | || ||||||||| |||||
Sbjct 125856 CTTTCAATGCTGCCCAATCCCATAAATCCGTAGGCGTAACATT--CCACATATCGTATTG 125913
Query 37347 TAGAAT 37352
| |||
Sbjct 125914 CAAAAT 125919
Score = 125 bits (138), Expect = 7e-24
Identities = 214/305 (70%), Gaps = 4/305 (1%)
Strand=Plus/Plus
Query 38091 ATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCG 38149
||||||| ||||| | || || ||||| ||||| || ||||||||||||| ||| | |
Sbjct 126642 ATTCTTT-TTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAATACAAAG 126700
Query 38150 ACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATA 38209
| |||||||||||| |||| ||||| |||| || ||||| | |||| || |||||||
Sbjct 126701 CAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTGTTATATA 126760
Query 38210 TTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCT 38269
|| | |||||| || | |||||| ||| || | | | ||| ||||||
Sbjct 126761 CTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTATTGGTGTACCCC 126820
Query 38270 TAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGAT-ATTAAAGCG 38328
|||||| |||| | || | ||| || ||||| || || ||| | || | ||
Sbjct 126821 TAGCTCTTATACAATGTACATTGAGTCCAATACCACCAGC-TGATTTACTAATGAGTGCA 126879
Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388
||| |||||| |||||| | || |||| ||||| || || | |||| || | ||||
Sbjct 126880 CATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGTTAACAGAAAA 126939
Query 38389 CAACT 38393
|||||
Sbjct 126940 CAACT 126944
Score = 84.2 bits (92), Expect = 2e-11
Identities = 121/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 37707 ATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACT 37766
||| ||||| ||||||||||| || | |||||| ||| || ||||| | ||||||
Sbjct 126108 ATTGCATACGGCAACTTCATCCGGACTAGAATATTGTACAATTTCCGTACACAAATTACT 126167
Query 37767 CGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAG 37826
|| |||||||||| | ||| ||||| ||||| || ||| ||| ||||| ||
Sbjct 126168 GCATTTAATTGTTCCTATATTTTGATGATTCGATTTACGGTTGCAATGATCCTTATAAAG 126227
Query 37827 TATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAA 37877
||| | || |||||| ||| | ||| || | | |||| | |||||||
Sbjct 126228 CATAAAAGGAGTTCCTGTTTCAACTTGGGCAACAAGTATAGCTGTCCATAA 126278
>seq48246
Length=3565318
Score = 102 bits (112), Expect = 8e-17
Identities = 151/209 (72%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 11900 TATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAAT 11959
||||| || |||||||| ||||||||||| || | || ||||| |||| ||||||
Sbjct 2532217 TATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGAAAG 2532276
Query 11960 CCATAGAAACATCGTGCCTCTGAACAC-TGTACATCCACATAAAATCTTTCCGCTAAATT 12018
||||||||||| |||||||||| ||| || || || ||||| ||| | | |||
Sbjct 2532277 CCATAGAAACAGCGTGCCTCTG-TCACTTGAACTTCTTGGCTAAATCGTTCTACGAGATT 2532335
Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078
|||||| || ||||| || | || || ||||||| || || |||||||| |||
Sbjct 2532336 CTCATTAACGATACCGTCGGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGTGTTT 2532395
Query 12079 TTCGTCTTTAG-TTAATTTATCCCAATCA 12106
||| || | |||| ||||||| |||
Sbjct 2532396 CTCG-CTAGCGTTTAAAATATCCCAGTCA 2532423
Score = 93.3 bits (102), Expect = 4e-14
Identities = 153/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491
|| |||| ||||||| |||| | ||||||||| || |||||||| || ||||| ||
Sbjct 2531613 ACCTTTTGGCAACCTAGCTCTAAGAGTAATCTATCCGCTACGAATTCGATGTACTGGCAC 2531672
Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551
|||| ||| ||||| || || | || || || | |||| | ||||||||||| | |
Sbjct 2531673 ATTAGTTTACAGTTCATGCCAATCATTTCAACAGGCAAAGCATCCGTCAAAAACTCTTGT 2531732
Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAAT 11611
|| || | || |||| | || |||||||| | ||| ||| || || |
Sbjct 2531733 TCAATTTCGACTGCATTCTTTATGATCGACGTAACTCGTTCGCAAGACGGCTTTTGCACG 2531792
Query 11612 AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652
| || || ||||||| || || ||||| ||||| |||||
Sbjct 2531793 ATGTGCTTGAACATTAGGCAAGCGAAATCGCAATGCAAACC 2531833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468228645473920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |