Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 120 4e-22
seq48246 100 4e-16
seq2114 87.8 2e-12
>seq10733
Length=171697
Score = 120 bits (132), Expect = 4e-22
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 65168 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 65227
||| |||||||| |||||||| ||||| ||||| ||||| | || |||||||| ||||
Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751
Query 65228 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 65287
||| ||||| | ||| ||||||||||| | || || || || || || || ||||||||
Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811
Query 65288 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 65347
|| | | ||| ||| |||| |||| | | ||| || ||||| | | | ||||
Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871
Query 65348 ATTCCAAAGATCCG 65361
|| ||| | |||||
Sbjct 125872 ATCCCATAAATCCG 125885
Score = 105 bits (116), Expect = 9e-18
Identities = 218/316 (69%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185
|| || ||||||||||||||||| | ||| | | |||||| |||||| ||||| ||
Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693
Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245
|| | || | |||| || | || |||||||| ||||| | |||| ||| || ||
Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753
Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305
||||| |||| | ||| |||| | |||||| ||| |||| || | || ||| |
Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811
Query 66306 --CTTCCACTTGCACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGA 66361
| || || || | ||| | || |||| || || || || || || ||||
Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869
Query 66362 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 66420
|| | ||| |||| |||||| |||||||| || || | |||||||| || ||| |||
Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929
Query 66421 TAAGTAGAAAACAGCT 66436
||| |||||||| ||
Sbjct 126930 TAA-CAGAAAACAACT 126944
Score = 100 bits (110), Expect = 4e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 65719 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778
|||||||||| || | |||| || |||| ||| || ||||| || |||| | | |
Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136
Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838
|||||||| || || || || | |||||| || || || ||||||| |||||| ||||
Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196
Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898
| || ||| || |||||||||||| || || ||||| || ||||||| || |
Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256
Query 65899 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 65958
| | || ||| |||| | | | | || | ||| ||||||||| || ||
Sbjct 126257 CAACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCTTTTCTCAT 126316
Query 65959 TTTCGTAT 65966
||||||||
Sbjct 126317 TTTCGTAT 126324
Score = 87.8 bits (96), Expect = 2e-12
Identities = 120/165 (73%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029
||||||| ||| || || || |||||||||| | || |||||| |||||| |||
Sbjct 126397 GTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGA 126456
Query 66030 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089
||||| || ||| | || | || |||||||||||||| |||||||| | |||
Sbjct 126457 CACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCAT 126516
Query 66090 AGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133
| | | || ||||| ||||| | ||||||||||| || |||||
Sbjct 126517 A-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560
>seq48246
Length=3565318
Score = 100 bits (110), Expect = 4e-16
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701
||||||| | ||||||||||||||| ||||| || || || ||||| ||||||||||| |
Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567
Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744
||| |||||| | | ||||| ||||| | ||||||||| ||
Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTT 2532610
>seq2114
Length=466
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 8/174 (5%)
Strand=Plus/Plus
Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474
||| |||| || ||||| | |||| || ||||||| ||||||||| || ||||| |||
Sbjct 261 CCTTCATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCA 320
Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534
| |||||| | ||||| || || | |||| || | ||| || || || ||||||
Sbjct 321 CTGTAATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAAT 380
Query 65535 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584
||||| ||| || |||| || ||||| | ||||||| ||||||||
Sbjct 381 GGATATCGCATTAAAAGGAAT----GCATCTGCCAGACCTTGAATTCCAATACC 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657756768973120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |