Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10733 120 4e-22 seq48246 100 4e-16 seq2114 87.8 2e-12 >seq10733 Length=171697 Score = 120 bits (132), Expect = 4e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 65168 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 65227 ||| |||||||| |||||||| ||||| ||||| ||||| | || |||||||| |||| Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751 Query 65228 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 65287 ||| ||||| | ||| ||||||||||| | || || || || || || || |||||||| Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811 Query 65288 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 65347 || | | ||| ||| |||| |||| | | ||| || ||||| | | | |||| Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871 Query 65348 ATTCCAAAGATCCG 65361 || ||| | ||||| Sbjct 125872 ATCCCATAAATCCG 125885 Score = 105 bits (116), Expect = 9e-18 Identities = 218/316 (69%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 66126 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAG 66185 || || ||||||||||||||||| | ||| | | |||||| |||||| ||||| || Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693 Query 66186 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 66245 || | || | |||| || | || |||||||| ||||| | |||| ||| || || Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753 Query 66246 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 66305 ||||| |||| | ||| |||| | |||||| ||| |||| || | || ||| | Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811 Query 66306 --CTTCCACTTGCACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGA 66361 | || || || | ||| | || |||| || || || || || || |||| Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869 Query 66362 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 66420 || | ||| |||| |||||| |||||||| || || | |||||||| || ||| ||| Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929 Query 66421 TAAGTAGAAAACAGCT 66436 ||| |||||||| || Sbjct 126930 TAA-CAGAAAACAACT 126944 Score = 100 bits (110), Expect = 4e-16 Identities = 171/248 (69%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 65719 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 65778 |||||||||| || | |||| || |||| ||| || ||||| || |||| | | | Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136 Query 65779 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 65838 |||||||| || || || || | |||||| || || || ||||||| |||||| |||| Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196 Query 65839 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 65898 | || ||| || |||||||||||| || || ||||| || ||||||| || | Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256 Query 65899 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 65958 | | || ||| |||| | | | | || | ||| ||||||||| || || Sbjct 126257 CAACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCTTTTCTCAT 126316 Query 65959 TTTCGTAT 65966 |||||||| Sbjct 126317 TTTCGTAT 126324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 65970 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 66029 ||||||| ||| || || || |||||||||| | || |||||| |||||| ||| Sbjct 126397 GTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGA 126456 Query 66030 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089 ||||| || ||| | || | || |||||||||||||| |||||||| | ||| Sbjct 126457 CACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCAT 126516 Query 66090 AGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGT 66133 | | | || ||||| ||||| | ||||||||||| || ||||| Sbjct 126517 A-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560 >seq48246 Length=3565318 Score = 100 bits (110), Expect = 4e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 ||||||| | ||||||||||||||| ||||| || || || ||||| ||||||||||| | Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 36702 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATT 36744 ||| |||||| | | ||||| ||||| | ||||||||| || Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTT 2532610 >seq2114 Length=466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Plus Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| |||| || ||||| | |||| || ||||||| ||||||||| || ||||| ||| Sbjct 261 CCTTCATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCA 320 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 | |||||| | ||||| || || | |||| || | ||| || || || |||||| Sbjct 321 CTGTAATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAAT 380 Query 65535 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 ||||| ||| || |||| || ||||| | ||||||| |||||||| Sbjct 381 GGATATCGCATTAAAAGGAAT----GCATCTGCCAGACCTTGAATTCCAATACC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657756768973120