Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16708 120 3e-22 seq21718 102 8e-17 >seq16708 Length=1145218 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| | || | ||| | |||| || |||||||| || |||||||||||| Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||||| ||||| ||||| |||||| ||||| || || ||||| Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | || | | || | ||||||| | ||| || Sbjct 1010225 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAAC 1010283 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||| ||||| |||||||| ||||| || || ||||| Sbjct 1010284 CTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331 Score = 111 bits (122), Expect = 2e-19 Identities = 147/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || || |||||||| || || ||||| | ||||| || | |||||||| ||||| || Sbjct 1010819 GTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTTCGAGTTGTTTTCC 1010877 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685 ||| ||||||| ||||| || || ||||| || ||||||||||| ||| | || | | Sbjct 1010878 AGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTC-TTGAATCTTGGCCT 1010936 Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 | | | ||| | || |||| | ||| ||||| | ||| | ||||||||| ||||||| Sbjct 1010937 TGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTCAACG 1010996 Query 139746 TTTTTACGAATATTTGCAT 139764 | || || || || ||||| Sbjct 1010997 TCTTGACAAAAATCTGCAT 1011015 Score = 105 bits (116), Expect = 7e-18 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| | || | ||| | |||| || || || || || || || ||||| Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | |||||||| ||||| ||||| |||||| ||||| || || ||||| Sbjct 1011305 AGTGTGCGTCCA-TCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGG 1011363 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714 || ||||||||||| ||| |||| | || | |||| || | || |||| | ||| Sbjct 1011364 AATTCCTTCTTTGTC-CTGAATTTTGGCCTT-GACGTTCTCAATCGTATCGGAAGCCTCA 1011421 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||||||| || ||||| || ||||| || ||||| Sbjct 1011422 ACCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Score = 100 bits (110), Expect = 3e-16 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| || || | ||| | |||| || || || || || || || ||||| Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | |||||||| ||||| ||||| |||||| ||||| || || ||||| Sbjct 1011077 AGTGTGCGTCCA-TCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGG 1011135 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714 || ||||||||||| ||| |||| | || | |||| || | || |||| | ||| Sbjct 1011136 AATTCCTTCTTTGTC-CTGAATTTTGGCCTT-GACGTTCTCAATCGTATCGGAAGCCTCA 1011193 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | |||||| || ||||| || || || || || ||||| Sbjct 1011194 ACCTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | |||| || ||||| || || ||||||||||| Sbjct 1009877 CCTCCTCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAA 1009936 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||||| || | ||||| | ||| || ||||| |||||| | |||||| || || || Sbjct 1009937 AGTGTGCGTCCA-TCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGG 1009995 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||| | ||| | | ||| | || |||| | ||| | Sbjct 1009996 AATTCCTTCTTTGTC-TTGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGA 1010054 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | ||||| || |||| || || || || || ||||| Sbjct 1010055 CTTCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCAT 1010103 >seq21718 Length=958615 Score = 102 bits (112), Expect = 8e-17 Identities = 141/192 (73%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAG 139633 |||| ||||||||||||||| | |||| || | || || | || || |||||| || Sbjct 51081 CTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCA-TCCTCCAATTGCTTTCCAGCAAAG 51139 Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTG 139692 |||| ||| || |||||||| || || || |||||||| ||| | |||| ||| | | Sbjct 51140 ATCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTC-TTGAATCTTTGCTTTCACATT 51198 Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752 || | ||||||| | ||| ||||| | ||| | ||| || || |||| ||||| || Sbjct 51199 CTCGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCAC 51258 Query 139753 GAATATTTGCAT 139764 |||||| ||||| Sbjct 51259 GAATATCTGCAT 51270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495750437945600