Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 120 3e-22
seq21718 102 8e-17
>seq16708
Length=1145218
Score = 120 bits (132), Expect = 3e-22
Identities = 165/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||||| | || | ||| | |||| || |||||||| || ||||||||||||
Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| || || |||||||| ||||| ||||| |||||| ||||| || || |||||
Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||||||||| ||| |||| | || | | || | ||||||| | ||| ||
Sbjct 1010225 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAAC 1010283
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||| | ||| | ||| ||||| |||||||| ||||| || || |||||
Sbjct 1010284 CTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331
Score = 111 bits (122), Expect = 2e-19
Identities = 147/199 (74%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626
|| || |||||||| || || ||||| | ||||| || | |||||||| ||||| ||
Sbjct 1010819 GTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTTCGAGTTGTTTTCC 1010877
Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TT 139685
||| ||||||| ||||| || || ||||| || ||||||||||| ||| | || | |
Sbjct 1010878 AGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTC-TTGAATCTTGGCCT 1010936
Query 139686 TTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745
| | | ||| | || |||| | ||| ||||| | ||| | ||||||||| |||||||
Sbjct 1010937 TGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTCAACG 1010996
Query 139746 TTTTTACGAATATTTGCAT 139764
| || || || || |||||
Sbjct 1010997 TCTTGACAAAAATCTGCAT 1011015
Score = 105 bits (116), Expect = 7e-18
Identities = 166/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||||| | || | ||| | |||| || || || || || || || |||||
Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||||| || | |||||||| ||||| ||||| |||||| ||||| || || |||||
Sbjct 1011305 AGTGTGCGTCCA-TCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGG 1011363
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714
|| ||||||||||| ||| |||| | || | |||| || | || |||| | |||
Sbjct 1011364 AATTCCTTCTTTGTC-CTGAATTTTGGCCTT-GACGTTCTCAATCGTATCGGAAGCCTCA 1011421
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||| | ||||||||| || ||||| || ||||| || |||||
Sbjct 1011422 ACCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471
Score = 100 bits (110), Expect = 3e-16
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
||||||| || || | ||| | |||| || || || || || || || |||||
Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||||| || | |||||||| ||||| ||||| |||||| ||||| || || |||||
Sbjct 1011077 AGTGTGCGTCCA-TCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGG 1011135
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCC 139714
|| ||||||||||| ||| |||| | || | |||| || | || |||| | |||
Sbjct 1011136 AATTCCTTCTTTGTC-CTGAATTTTGGCCTT-GACGTTCTCAATCGTATCGGAAGCCTCA 1011193
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||| | |||||| || ||||| || || || || || |||||
Sbjct 1011194 ACCTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243
Score = 87.8 bits (96), Expect = 2e-12
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| ||||| | ||| | ||| | |||| || ||||| || || |||||||||||
Sbjct 1009877 CCTCCTCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAA 1009936
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||||| || | ||||| | ||| || ||||| |||||| | |||||| || || ||
Sbjct 1009937 AGTGTGCGTCCA-TCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGG 1009995
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|| ||||||||||| ||| |||| | ||| | | ||| | || |||| | ||| |
Sbjct 1009996 AATTCCTTCTTTGTC-TTGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGA 1010054
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| || | || | ||||| || |||| || || || || || |||||
Sbjct 1010055 CTTCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCAT 1010103
>seq21718
Length=958615
Score = 102 bits (112), Expect = 8e-17
Identities = 141/192 (73%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 139575 CTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAG 139633
|||| ||||||||||||||| | |||| || | || || | || || |||||| ||
Sbjct 51081 CTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCA-TCCTCCAATTGCTTTCCAGCAAAG 51139
Query 139634 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTG 139692
|||| ||| || |||||||| || || || |||||||| ||| | |||| ||| | |
Sbjct 51140 ATCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTC-TTGAATCTTTGCTTTCACATT 51198
Query 139693 TTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTAC 139752
|| | ||||||| | ||| ||||| | ||| | ||| || || |||| ||||| ||
Sbjct 51199 CTCGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCAC 51258
Query 139753 GAATATTTGCAT 139764
|||||| |||||
Sbjct 51259 GAATATCTGCAT 51270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495750437945600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |