Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10733 143 4e-29 seq2660 93.3 6e-14 seq48246 89.7 7e-13 seq2114 86.0 9e-12 >seq10733 Length=171697 Score = 143 bits (158), Expect = 4e-29 Identities = 199/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055 ||| || || ||||| | ||| | | || || |||| | | | | | ||| ||||| Sbjct 125641 ATTTTTCATATCTTCGTCCCAAAGATCCCTTTCAGTTAGATCCCGCAATAAATGAGGATT 125700 Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115 ||| |||||||| ||||| ||||| ||||| | || |||||||| ||||||||||||| Sbjct 125701 AACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGTATATGGTTC 125760 Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175 | |||||||||||||| | || || || || || || ||||||||||| || | | Sbjct 125761 TATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGGCGCAATTAG 125820 Query 79176 TAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAG 79235 ||| ||| |||| |||| | ||| || ||||| | | | |||||||||| | Sbjct 125821 CAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCAATCCCATAA 125880 Query 79236 ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274 ||| | || ||||||||| | ||| ||||| | ||| Sbjct 125881 ATCCGTAGGCGTAACATTCCACATATCGTATTGCAAAAT 125919 Score = 114 bits (126), Expect = 2e-20 Identities = 220/316 (70%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064 || || ||||||||||||||||| | ||| | | |||||| | |||||| ||||| || Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693 Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124 || | || | |||| |||| || |||||||| ||||| | |||| ||| || || Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753 Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184 ||||| |||| | ||| |||| | |||||| ||| |||| || | || ||| | Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811 Query 80185 --CTTCCACTGGCACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGA 80240 | || || || | ||| | || |||| || || || || || || |||| Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869 Query 80241 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGT 80299 || | ||| |||| |||||| |||||||| || || | || ||||| ||| ||| ||| Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929 Query 80300 TAAGTAGAAAACAGCT 80315 ||| |||||||| || Sbjct 126930 TAA-CAGAAAACAACT 126944 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 79598 TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657 |||||||||| || | || | || |||| ||| || ||||| || |||| | | | Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136 Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717 |||||||| ||||| || || | ||||| || ||||| ||||||| |||||| |||| Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196 Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771 | || ||| || |||||||||||| || || ||||| || ||||||| Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAA 126250 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 80689 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 ||||||||||| || || ||||| || || || ||||| || ||||| | ||||||||| Sbjct 127483 TTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATACAGCATAATCT 127542 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || || | |||||| ||| ||||| |||| ||||| ||| | || ||||| || || Sbjct 127543 GGGTGCTTTGTAGTCATAGTAGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACTGTG 127602 Query 80809 GTTACTCCATTATATA 80824 || || || ||||| Sbjct 127603 GTAACACCCGAATATA 127618 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||| || || || ||||||||||| | ||| |||||| |||| | |||||||| || Sbjct 126408 TTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGACACATTAAACT 126467 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 79978 ||| | |||| || |||||||||||||| |||||||| | ||| | | | || | Sbjct 126468 CCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCATA-ACCCGTAGA 126526 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012 ||| ||||| | ||||| ||||| || ||||| Sbjct 126527 ATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560 >seq2660 Length=453 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 80689 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748 ||||||||||| || || ||||| || || || ||||| || ||||| | ||||||||| Sbjct 39 TTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATACAGCATAATCT 98 Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808 || || | |||||| ||| ||||| |||| ||||| ||| | || ||||| || || Sbjct 99 GGGTGCTTTGTAGTCATAGTAGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACTGTG 158 Query 80809 GTTACTCCATTATATA 80824 || || || ||||| Sbjct 159 GTAACACCCGAATATA 174 >seq48246 Length=3565318 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503 ||||||| | ||| ||||||||||| ||||| || || || ||||| ||||||||||| | Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552 ||| |||||| | | || || || || | ||||||||| || || || Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTT 2532616 >seq2114 Length=466 Score = 86.0 bits (94), Expect = 9e-12 Identities = 120/168 (71%), Gaps = 8/168 (5%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || ||||| || | |||| || ||| |||||||||||||| || ||||| || | |||| Sbjct 267 TAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCACTGTAA 326 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA- 79418 || | ||||| || || | |||| || | ||| || ||| || ||||||||||| Sbjct 327 TACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAATGGATAT 386 Query 79419 ---ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 ||| || |||| || ||||| | ||||||| |||||||| Sbjct 387 CGCATTAAAAGGAAT----GCATCTGCCAGACCTTGAATTCCAATACC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717814782291520