Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 143 4e-29
seq2660 93.3 6e-14
seq48246 89.7 7e-13
seq2114 86.0 9e-12
>seq10733
Length=171697
Score = 143 bits (158), Expect = 4e-29
Identities = 199/279 (71%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055
||| || || ||||| | ||| | | || || |||| | | | | | ||| |||||
Sbjct 125641 ATTTTTCATATCTTCGTCCCAAAGATCCCTTTCAGTTAGATCCCGCAATAAATGAGGATT 125700
Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115
||| |||||||| ||||| ||||| ||||| | || |||||||| |||||||||||||
Sbjct 125701 AACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGTATATGGTTC 125760
Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175
| |||||||||||||| | || || || || || || ||||||||||| || | |
Sbjct 125761 TATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGGCGCAATTAG 125820
Query 79176 TAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAG 79235
||| ||| |||| |||| | ||| || ||||| | | | |||||||||| |
Sbjct 125821 CAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCAATCCCATAA 125880
Query 79236 ATCAGACGGGACAACATTCCAAAGATCATATTGTAGAAT 79274
||| | || ||||||||| | ||| ||||| | |||
Sbjct 125881 ATCCGTAGGCGTAACATTCCACATATCGTATTGCAAAAT 125919
Score = 114 bits (126), Expect = 2e-20
Identities = 220/316 (70%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 80005 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 80064
|| || ||||||||||||||||| | ||| | | |||||| | |||||| ||||| ||
Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693
Query 80065 TATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 80124
|| | || | |||| |||| || |||||||| ||||| | |||| ||| || ||
Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753
Query 80125 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAG 80184
||||| |||| | ||| |||| | |||||| ||| |||| || | || ||| |
Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811
Query 80185 --CTTCCACTGGCACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGA 80240
| || || || | ||| | || |||| || || || || || || ||||
Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869
Query 80241 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGT 80299
|| | ||| |||| |||||| |||||||| || || | || ||||| ||| ||| |||
Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929
Query 80300 TAAGTAGAAAACAGCT 80315
||| |||||||| ||
Sbjct 126930 TAA-CAGAAAACAACT 126944
Score = 98.7 bits (108), Expect = 1e-15
Identities = 126/174 (72%), Gaps = 0/174 (0%)
Strand=Plus/Plus
Query 79598 TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 79657
|||||||||| || | || | || |||| ||| || ||||| || |||| | | |
Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136
Query 79658 CATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGAT 79717
|||||||| ||||| || || | ||||| || ||||| ||||||| |||||| ||||
Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196
Query 79718 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAA 79771
| || ||| || |||||||||||| || || ||||| || |||||||
Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAA 126250
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 80689 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748
||||||||||| || || ||||| || || || ||||| || ||||| | |||||||||
Sbjct 127483 TTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATACAGCATAATCT 127542
Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808
|| || | |||||| ||| ||||| |||| ||||| ||| | || ||||| || ||
Sbjct 127543 GGGTGCTTTGTAGTCATAGTAGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACTGTG 127602
Query 80809 GTTACTCCATTATATA 80824
|| || || |||||
Sbjct 127603 GTAACACCCGAATATA 127618
Score = 86.0 bits (94), Expect = 9e-12
Identities = 113/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919
||| || || || ||||||||||| | ||| |||||| |||| | |||||||| ||
Sbjct 126408 TTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGACACATTAAACT 126467
Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 79978
||| | |||| || |||||||||||||| |||||||| | ||| | | | || |
Sbjct 126468 CCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCATA-ACCCGTAGA 126526
Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 80012
||| ||||| | ||||| ||||| || |||||
Sbjct 126527 ATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560
>seq2660
Length=453
Score = 93.3 bits (102), Expect = 6e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 80689 TTTTTTGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCT 80748
||||||||||| || || ||||| || || || ||||| || ||||| | |||||||||
Sbjct 39 TTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATACAGCATAATCT 98
Query 80749 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTT 80808
|| || | |||||| ||| ||||| |||| ||||| ||| | || ||||| || ||
Sbjct 99 GGGTGCTTTGTAGTCATAGTAGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACTGTG 158
Query 80809 GTTACTCCATTATATA 80824
|| || || |||||
Sbjct 159 GTAACACCCGAATATA 174
>seq48246
Length=3565318
Score = 89.7 bits (98), Expect = 7e-13
Identities = 85/109 (78%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 50444 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 50503
||||||| | ||| ||||||||||| ||||| || || || ||||| ||||||||||| |
Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567
Query 50504 TCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 50552
||| |||||| | | || || || || | ||||||||| || || ||
Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTT 2532616
>seq2114
Length=466
Score = 86.0 bits (94), Expect = 9e-12
Identities = 120/168 (71%), Gaps = 8/168 (5%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359
|| ||||| || | |||| || ||| |||||||||||||| || ||||| || | ||||
Sbjct 267 TAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCACTGTAA 326
Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATA- 79418
|| | ||||| || || | |||| || | ||| || ||| || |||||||||||
Sbjct 327 TACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAATGGATAT 386
Query 79419 ---ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463
||| || |||| || ||||| | ||||||| ||||||||
Sbjct 387 CGCATTAAAAGGAAT----GCATCTGCCAGACCTTGAATTCCAATACC 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 717814782291520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |