Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq16708 100 2e-16 seq36416 95.1 9e-15 seq21718 89.7 4e-13 >seq16708 Length=1145218 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || || || |||| ||| | |||| ||||| || | ||||||||| || Sbjct 1010561 CCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010620 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| | || |||| || || |||||||| || ||||| |||||||| | || Sbjct 1010621 AGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGT 1010680 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | || ||||| || |||| | | ||||| | ||| || || ||||||||| Sbjct 1010681 ATTCCCTCTTTGTC-CTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGAC 1010739 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || ||||| || || || | |||||||||||||| |||||| Sbjct 1010740 TTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCATT 1010788 >seq36416 Length=241146 Score = 95.1 bits (104), Expect = 9e-15 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 42881 CGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGG 42940 |||| || | || | |||||||||||| | ||| ||||||||| | || ||||||| Sbjct 80656 CGCCGCCTCTCAAGCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGG 80597 Query 42941 ACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGG 42997 ||| || | | || ||||||||||||||||||||||||| || |||||||||| Sbjct 80596 ACAGAGTTCTCCCATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGG 80540 >seq21718 Length=958615 Score = 89.7 bits (98), Expect = 4e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 || |||||||| | || ||| | || |||||||| || || ||||| ||||| |||||| Sbjct 51092 TTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACGCTGT 51151 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||||| || | || ||||| || ||| |||| || | | | |||||| Sbjct 51152 TGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCTCGATAGTGTCG 51211 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||| || || | || || ||||| || || || |||||||| || || ||||| Sbjct 51212 GAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGAATATCTGCAT 51270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381134562868944