Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq10733 118 1e-21 seq48246 89.7 7e-13 seq2660 87.8 2e-12 >seq10733 Length=171697 Score = 118 bits (130), Expect = 1e-21 Identities = 173/245 (71%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 71079 ATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATT 71138 |||||| || ||||| | ||| | | || || |||| | | | | | ||||||||| Sbjct 125641 ATTTTTCATATCTTCGTCCCAAAGATCCCTTTCAGTTAGATCCCGCAATAAATGAGGATT 125700 Query 71139 AACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTC 71198 ||| |||||||| ||||| ||||| ||||| | || |||||||| ||||||| ||||| Sbjct 125701 AACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGTATATGGTTC 125760 Query 71199 CACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 71258 | || ||||||||||| | || || || || || || || |||||||| || | | Sbjct 125761 TATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGGCGCAATTAG 125820 Query 71259 TAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAG 71318 | | ||| |||| || ||| ||| || ||||| | | | |||||| ||| | Sbjct 125821 CAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCAATCCCATAA 125880 Query 71319 ATCCG 71323 ||||| Sbjct 125881 ATCCG 125885 Score = 114 bits (126), Expect = 2e-20 Identities = 219/316 (69%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 72088 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 72147 || || ||||||||||||||||| | ||| | | |||||| | |||||| ||||| || Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693 Query 72148 TATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 72207 || | || | |||| || | || |||||||| ||||| | |||| ||| || || Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753 Query 72208 TTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAG 72267 ||||| |||| | ||| |||| | |||||| ||| ||||| || | || ||| | Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811 Query 72268 --CTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 | || || || | || | || |||| || || || || || || |||| Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 72382 || | ||| |||| |||||| |||||||| || || | |||||||| || ||| ||| Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929 Query 72383 TAAGTAGAAAACAGCT 72398 ||| |||||||| || Sbjct 126930 TAA-CAGAAAACAACT 126944 Score = 107 bits (118), Expect = 3e-18 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 71681 TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGG 71740 ||||||||| || | |||| || |||| ||| || ||||| || |||| | | | Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136 Query 71741 CATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 71800 |||||||| |||||| || || | |||||| || || || ||||||| |||||| |||| Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196 Query 71801 TACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAA 71854 | || ||| || |||||||||||| ||||| ||||| || ||||||| Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAA 126250 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 ||||||||||| || || ||||| || || || ||||| || |||| | ||||||||| Sbjct 127483 TTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATACAGCATAATCT 127542 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 || || | |||||| ||| ||||| |||| ||||| ||| | || ||||| || || Sbjct 127543 GGGTGCTTTGTAGTCATAGTAGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACTGTG 127602 Query 72892 GTTACTCCATTATATA 72907 || || || ||||| Sbjct 127603 GTAACACCCGAATATA 127618 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||| || || || |||||| ||| | ||| |||||| |||||| |||||||| || Sbjct 126408 TTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGACACATTAAACT 126467 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 72061 ||| | |||| ||| |||||||||||||| |||||||| | ||| | | | || | Sbjct 126468 CCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCATA-ACCCGTAGA 126526 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGT 72095 ||| ||||| | ||||| ||||| || ||||| Sbjct 126527 ATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560 >seq48246 Length=3565318 Score = 89.7 bits (98), Expect = 7e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 ||||||| | ||| |||||||| || ||||| || || |||||||| ||||||||||| | Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 42609 TCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||| || ||| | | ||||| || || | ||||||||| || || || Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTT 2532616 >seq2660 Length=453 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 72772 ttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCT 72831 ||||||||||| || || ||||| || || || ||||| || |||| | ||||||||| Sbjct 39 TTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATACAGCATAATCT 98 Query 72832 GGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTT 72891 || || | |||||| ||| ||||| |||| ||||| ||| | || ||||| || || Sbjct 99 GGGTGCTTTGTAGTCATAGTAGCTGCAGTTTCAGCTGCAAGATTATCTAATTCAACTGTG 158 Query 72892 GTTACTCCATTATATA 72907 || || || ||||| Sbjct 159 GTAACACCCGAATATA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670714972911680