Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq16708 111 2e-19 >seq16708 Length=1145218 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046 || |||||||||||||| |||||||| | ||||| || | |||||||||||||| || Sbjct 1010819 GTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTTCGAGTTGTTTTCC 1010877 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| ||||||| ||||| || || ||||| || ||||||||||| ||| || || Sbjct 1010878 AGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTT 1010937 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | ||| | ||| || | | || || || | || | ||||||||| ||||| || Sbjct 1010938 GACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTCAACGT 1010997 Query 143167 TTTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 1010998 CTTGACAAAAATCTGCAT 1011015 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||||| || ||||| || ||||| |||||||| | ||||| | ||||| Sbjct 1010350 AACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGCCCATCTTC 1010409 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||| ||||| ||||||| ||||| || || |||||||| || |||||||| Sbjct 1010410 GAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGTATTCCCTCTTTGTCCTG 1010469 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| || || | | || | ||| || | | || || || | || | |||||| Sbjct 1010470 AATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTT 1010529 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| |||||||| || || || || ||||| Sbjct 1010530 GCCTGTCAATGTCTTGACAAAAATCTGCAT 1010559 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTT 143033 ||| | ||||| || ||||| || ||||| |||||||| | ||||| || | |||| Sbjct 1011262 AACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTT 1011320 Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093 |||||||||| ||||| |||||| ||||| || || ||||| || ||||||||||| Sbjct 1011321 CGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCT 1011380 Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153 |||||| || | | || | ||| || | | || || || | || | ||||| Sbjct 1011381 GAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCT 1011440 Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || || || || ||||| || ||||| Sbjct 1011441 TGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || || | ||| | ||||| || ||||| || ||||| |||||||| Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||||| || | |||||||||||||| ||||| |||||| ||||| || || ||||| Sbjct 1011077 AGTGTGCGTCCA-TCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGG 1011135 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| |||||| || | | || | ||| || | | || || Sbjct 1011136 AATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAAC 1011195 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| || ||||| || || || || || ||||| Sbjct 1011196 CTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||||| || || ||||| || ||||| |||||| | || || ||||| Sbjct 1010122 AACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTTCCATCTTC 1010181 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||| ||||| |||||| ||||| || || ||||| || ||||||||||| Sbjct 1010182 GAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTG 1010241 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| || | | || | |||||| | | || || || | || | ||| || Sbjct 1010242 AATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTTATCGTTTT 1010301 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| ||||| || ||||| || || ||||| Sbjct 1010302 GCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | | || || ||||||| ||||||||||| || ||||||||||| Sbjct 654727 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGAT 654786 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | || || ||||| || ||||| |||||| ||| |||||||| ||||| Sbjct 654787 AGAGTTCGTCCA-TCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 654845 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || || || ||||| ||| | | ||| | ||| || | | ||| || Sbjct 654846 AATTCCCTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGAC 654905 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | || | || || || || | || |||||||| || ||||| Sbjct 654906 TTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506693916197760