Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 111 2e-19
>seq16708
Length=1145218
Score = 111 bits (122), Expect = 2e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTCGAGTTGTTTACC 143046
|| |||||||||||||| |||||||| | ||||| || | |||||||||||||| ||
Sbjct 1010819 GTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTTCGAGTTGTTTTCC 1010877
Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106
||| ||||||| ||||| || || ||||| || ||||||||||| ||| || ||
Sbjct 1010878 AGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTT 1010937
Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166
| | ||| | ||| || | | || || || | || | ||||||||| ||||| ||
Sbjct 1010938 GACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTCAACGT 1010997
Query 143167 TTTTACGAATATTTGCAT 143184
|| || || || |||||
Sbjct 1010998 CTTGACAAAAATCTGCAT 1011015
Score = 109 bits (120), Expect = 6e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034
||| | ||||| || ||||| || ||||| |||||||| | ||||| | |||||
Sbjct 1010350 AACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGCCCATCTTC 1010409
Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094
||||||||| ||||| ||||||| ||||| || || |||||||| || ||||||||
Sbjct 1010410 GAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGTATTCCCTCTTTGTCCTG 1010469
Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154
||| || || | | || | ||| || | | || || || | || | ||||||
Sbjct 1010470 AATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTT 1010529
Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| |||||||| || || || || |||||
Sbjct 1010530 GCCTGTCAATGTCTTGACAAAAATCTGCAT 1010559
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTT 143033
||| | ||||| || ||||| || ||||| |||||||| | ||||| || | ||||
Sbjct 1011262 AACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTT 1011320
Query 143034 CGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGG 143093
|||||||||| ||||| |||||| ||||| || || ||||| || |||||||||||
Sbjct 1011321 CGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCT 1011380
Query 143094 TAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCT 143153
|||||| || | | || | ||| || | | || || || | || | |||||
Sbjct 1011381 GAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCT 1011440
Query 143154 TGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|||| || || || || ||||| || |||||
Sbjct 1011441 TGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471
Score = 102 bits (112), Expect = 8e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| || || | ||| | ||||| || ||||| || ||||| ||||||||
Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| ||||| || | |||||||||||||| ||||| |||||| ||||| || || |||||
Sbjct 1011077 AGTGTGCGTCCA-TCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGG 1011135
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| |||||| || | | || | ||| || | | || ||
Sbjct 1011136 AATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAAC 1011195
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | || | |||||| || ||||| || || || || || |||||
Sbjct 1011196 CTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243
Score = 100 bits (110), Expect = 3e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034
||| | ||||| || || ||||| || ||||| |||||| | || || |||||
Sbjct 1010122 AACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTTCCATCTTC 1010181
Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094
||||||||| ||||| |||||| ||||| || || ||||| || |||||||||||
Sbjct 1010182 GAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTG 1010241
Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154
|||||| || | | || | |||||| | | || || || | || | ||| ||
Sbjct 1010242 AATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTTATCGTTTT 1010301
Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| ||||| || ||||| || || |||||
Sbjct 1010302 GCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||| || | | || || ||||||| ||||||||||| || |||||||||||
Sbjct 654727 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGAT 654786
Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076
| || | || | || || ||||| || ||||| |||||| ||| |||||||| |||||
Sbjct 654787 AGAGTTCGTCCA-TCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 654845
Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| || || || || ||||| ||| | | ||| | ||| || | | ||| ||
Sbjct 654846 AATTCCCTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGAC 654905
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
||| | || | || || || || | || |||||||| || |||||
Sbjct 654906 TTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654953
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 506693916197760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |