Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq16708 158 9e-34 seq36416 95.1 9e-15 >seq16708 Length=1145218 Score = 158 bits (174), Expect = 9e-34 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || || ||| | ||||||||| || ||||| || ||||| |||||| Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | ||||| | |||||| |||||| | ||||| ||||||||||| ||| Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||||| ||| ||| | || || || ||| | || || Sbjct 1010225 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACC 1010284 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || ||||| ||||||| || ||||||||||| ||||| Sbjct 1010285 TCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||||| || ||| | |||||| ||||| || || ||||| |||||||| Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||| |||||| | ||||| ||||||||||| ||| Sbjct 1011077 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011136 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||||| ||| || | || || |||||| | || || Sbjct 1011137 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011196 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || || || |||| ||| || |||||||| ||||| Sbjct 1011197 TCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||| | ||| | || | |||||| ||||| || ||||| ||||||||||| | Sbjct 653815 CCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 653874 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| ||| | || ||||| || ||||||||| | |||||||| || || || ||| Sbjct 653875 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 653934 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| || ||||| |||||| || ||| | || || || || ||| || Sbjct 653935 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACT 653994 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||| ||||| ||||| ||||| ||||| ||||| Sbjct 653995 TCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || || ||| | |||||| ||||| || || ||||| |||||||| Sbjct 1010333 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010392 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | | ||||| | |||||| |||||| | |||| ||||||||||| || Sbjct 1010393 AGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGT 1010452 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| |||||||| ||| ||| ||| ||| | || || |||||| | || || Sbjct 1010453 ATTCCCTCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAACC 1010512 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || || ||||||| || || |||||||| ||||| Sbjct 1010513 TCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCAT 1010559 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| | ||||||||| || || || || ||||| ||||| || | | | ||||| Sbjct 1009894 AACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAAAGTGTGCGTCCATCTTC 1009953 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||| || || |||||| | ||||| | ||| ||||| |||||||||||||||||| Sbjct 1009954 TAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCTTCTTTGTCTTG 1010013 Query 15274 AATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 |||||| ||| || ||| |||| ||||||||| || || || || || || || | Sbjct 1010014 AATTTTAGCT-TTCACATTTTCGATGGTATCGGACGCCTCGACTTCCAATGTGATAGTCT 1010072 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || |||||||| || |||||||| ||||| Sbjct 1010073 TCCCAGTCAGAGTCTTAACAAAAATCTGCAT 1010103 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||||| || || ||| | |||||| ||||| || || ||||| |||||||| Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | ||||| | |||||| |||||| | ||||| ||||||||||| ||| Sbjct 1011305 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011364 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||||| ||| || | || || |||||| | || || Sbjct 1011365 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011424 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| || || || ||||| | || || || || || ||||| Sbjct 1011425 TCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| || ||||| ||||||||||| |||| ||| | || ||||| || Sbjct 654522 ATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCTAACTG 654581 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | |||||||| || || || |||||||| || ||||| ||||| Sbjct 654582 CTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATTTT 654641 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| | || || || || ||| || || | ||| |||||||| ||||| Sbjct 654642 GGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTCCCTGT 654701 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| ||||| ||||| Sbjct 654702 GAGAGTCTTTACGAAAATCTGCAT 654725 Score = 120 bits (132), Expect = 2e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || ||||| || ||||||||||| |||| ||| | || ||| Sbjct 654745 ACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654804 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||||||| | |||||||| || || || |||||||| || || || Sbjct 654805 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGG 654864 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || || |||| || ||||| | ||| || || | ||| || ||||| Sbjct 654865 ATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTTC 654924 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| ||||| ||||| ||||| Sbjct 654925 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654953 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| ||||||||||| |||||||| || | | | ||||| | ||| Sbjct 1010812 ATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCATCTTCGAGTTG 1010871 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||| |||||| | |||| ||||||||||| ||||||||||||||||| ||| || Sbjct 1010872 TTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGAATCTT 1010931 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||| || |||| || |||||| | || || || | ||| || || || ||||| Sbjct 1010932 GGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGT 1010991 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| ||||| Sbjct 1010992 CAACGTCTTGACAAAAATCTGCAT 1011015 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || || || ||||||||||| |||| ||| | || ||| Sbjct 654289 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654348 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||||||| | |||||||| || || || |||||||| || || || Sbjct 654349 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGG 654408 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || || |||| || ||||| | ||| || || | ||| || ||||| Sbjct 654409 ATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTTC 654468 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| ||||| ||||| ||||| ||||| Sbjct 654469 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654497 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 |||||| ||||| || ||||| ||||||||||| ||| | | | || |||| ||| Sbjct 654978 ATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAGAGAGTACGTCCATCCTCTAGTTG 655037 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 ||||||||| | |||||||| || || || ||||||||||| || || ||||| Sbjct 655038 CTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTT 655097 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || || |||| || || || | ||| || || | ||| |||||||| ||||| Sbjct 655098 GGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGT 655157 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| || ||||| Sbjct 655158 GAGAGTCTTGACAAAGATCTGCAT 655181 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||||| || ||| | |||||| ||||| || || ||||| |||||||| Sbjct 1010561 CCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010620 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | | | || || | || || || || | || || |||||||| || || Sbjct 1010621 AGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGT 1010680 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 ||||| |||||||| ||||||| ||| ||| | || || ||||| | || || Sbjct 1010681 ATTCCCTCTTTGTCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACT 1010740 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || |||| ||||| |||||||| ||||| Sbjct 1010741 TCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 1010787 >seq36416 Length=241146 Score = 95.1 bits (104), Expect = 9e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||| |||||||| | ||| || ||||| | ||||| || ||||| ||||| |||||| Sbjct 80655 GCCGCCTCTCAAGCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGGA 80596 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 ||| ||||| | || || ||||||||||| || | |||| | |||||| ||| ||| Sbjct 80595 CAGAGTTCTCCCATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGGGTGG 80536 Query 15256 AATTCCT 15262 ||||||| Sbjct 80535 AATTCCT 80529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361955989864488