Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 98.7 6e-16
>seq16708
Length=1145218
Score = 98.7 bits (108), Expect = 6e-16
Identities = 167/240 (70%), Gaps = 8/240 (3%)
Strand=Plus/Plus
Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192
||||| || |||||||| || || | |||| ||| | || || || || ||||||||
Sbjct 1011007 AATCTGCATTCCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATT 1011066
Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252
||||||||| | || || || || | ||| |||||| || || || ||||| ||
Sbjct 1011067 GTAATCAGAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTG 1011126
Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTC 33309
||||| || || |||||||| || || | ||| || || | | |||||| ||
Sbjct 1011127 GTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCC---TTGACGTTCTCAATCGTATC 1011183
Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
| | | ||| || || |||||||| ||||| || | ||| || || ||||| |||||
Sbjct 1011184 GGAAGCCTCAACCTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243
Score = 91.5 bits (100), Expect = 9e-14
Identities = 145/207 (70%), Gaps = 6/207 (3%)
Strand=Plus/Plus
Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225
||||| || || ||||||||||||||||||||||| | || || || || | |||
Sbjct 1010812 ATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCATCTTCGAGTTG 1010871
Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC-- 33283
|||||| || || | ||||| ||||||| || || |||||||| || ||||
Sbjct 1010872 TTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGAATCTT 1010931
Query 33284 -GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342
||| || || ||| |||||| ||| | | ||| || || |||||||| || ||
Sbjct 1010932 GGCC---TTGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCC 1010988
Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| | || || || ||||| |||||
Sbjct 1010989 TGTCAACGTCTTGACAAAAATCTGCAT 1011015
Score = 87.8 bits (96), Expect = 1e-12
Identities = 167/244 (68%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192
||||| || |||||||| | || | |||| ||| | || || || || ||||||||
Sbjct 1011235 AATCTGCATTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATT 1011294
Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252
||||||||| | || || || || | ||| |||||| || || || ||||| ||
Sbjct 1011295 GTAATCAGAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTG 1011354
Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTC 33309
||||| || || |||||||| || || | ||| || || | | |||||| ||
Sbjct 1011355 GTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCC---TTGACGTTCTCAATCGTATC 1011411
Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
| | | ||| || || |||||||| || || || | || || ||||| || |||||
Sbjct 1011412 GGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471
Query 33370 GTTT 33373
| ||
Sbjct 1011472 GATT 1011475
Score = 82.4 bits (90), Expect = 5e-11
Identities = 146/212 (69%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
|||||||| | || ||||| || || || ||||| || |||||| | || || |||
Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277
| ||||| ||| || || ||||| ||||| || | || || || || || || |
Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180
Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337
| | || ||| || | | |||||||| || || || ||||| || || |||
Sbjct 654181 ATTTTGGC---TTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTT 654237
Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || || ||||| ||||||||||| |||||
Sbjct 654238 TTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269
Score = 82.4 bits (90), Expect = 5e-11
Identities = 150/216 (69%), Gaps = 14/216 (6%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC-ATC 33219
|||| ||| | || ||||| ||||| || ||||||||||| | ||||| ||| |||
Sbjct 654517 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATA----GAGTTCGTCCATC 654572
Query 33220 C---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
| || ||||| ||| || || ||||| ||||| || | || || || || || ||
Sbjct 654573 CTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTC 654632
Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
| | | || ||| || | | |||||||| || || || ||||| || ||
Sbjct 654633 CTGGATTTTGGC---TTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGAT 654689
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
||||| || || ||||| ||||||||||| |||||
Sbjct 654690 GGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318581138162064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |