Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq16708 98.7 6e-16 >seq16708 Length=1145218 Score = 98.7 bits (108), Expect = 6e-16 Identities = 167/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || |||||||| || || | |||| ||| | || || || || |||||||| Sbjct 1011007 AATCTGCATTCCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATT 1011066 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||||||| | || || || || | ||| |||||| || || || ||||| || Sbjct 1011067 GTAATCAGAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTG 1011126 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTC 33309 ||||| || || |||||||| || || | ||| || || | | |||||| || Sbjct 1011127 GTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCC---TTGACGTTCTCAATCGTATC 1011183 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | | ||| || || |||||||| ||||| || | ||| || || ||||| ||||| Sbjct 1011184 GGAAGCCTCAACCTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243 Score = 91.5 bits (100), Expect = 9e-14 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 ||||| || || ||||||||||||||||||||||| | || || || || | ||| Sbjct 1010812 ATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCATCTTCGAGTTG 1010871 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATC-- 33283 |||||| || || | ||||| ||||||| || || |||||||| || |||| Sbjct 1010872 TTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGAATCTT 1010931 Query 33284 -GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCC 33342 ||| || || ||| |||||| ||| | | ||| || || |||||||| || || Sbjct 1010932 GGCC---TTGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCC 1010988 Query 33343 CGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | || || || ||||| ||||| Sbjct 1010989 TGTCAACGTCTTGACAAAAATCTGCAT 1011015 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/244 (68%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || |||||||| | || | |||| ||| | || || || || |||||||| Sbjct 1011235 AATCTGCATTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATT 1011294 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||||||||| | || || || || | ||| |||||| || || || ||||| || Sbjct 1011295 GTAATCAGAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTG 1011354 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAA---TCGCCTGTTTTACTGTTTGAATCGTGTC 33309 ||||| || || |||||||| || || | ||| || || | | |||||| || Sbjct 1011355 GTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCC---TTGACGTTCTCAATCGTATC 1011411 Query 33310 GTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | | | ||| || || |||||||| || || || | || || ||||| || ||||| Sbjct 1011412 GGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Query 33370 GTTT 33373 | || Sbjct 1011472 GATT 1011475 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || ||||| || || || ||||| || |||||| | || || ||| Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---G 33277 | ||||| ||| || || ||||| ||||| || | || || || || || || | Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180 Query 33278 CTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | || ||| || | | |||||||| || || || ||||| || || ||| Sbjct 654181 ATTTTGGC---TTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTT 654237 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| ||||||||||| ||||| Sbjct 654238 TTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 14/216 (6%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC-ATC 33219 |||| ||| | || ||||| ||||| || ||||||||||| | ||||| ||| ||| Sbjct 654517 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATA----GAGTTCGTCCATC 654572 Query 33220 C---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 | || ||||| ||| || || ||||| ||||| || | || || || || || || Sbjct 654573 CTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTC 654632 Query 33277 ---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 | | | || ||| || | | |||||||| || || || ||||| || || Sbjct 654633 CTGGATTTTGGC---TTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGAT 654689 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || ||||| ||||||||||| ||||| Sbjct 654690 GGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318581138162064