Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq48246 93.3 4e-14 >seq48246 Length=3565318 Score = 93.3 bits (102), Expect = 4e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 || || || || || |||||| ||||||||||| || | || |||||||||| ||| Sbjct 2532214 ATGTATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGA 2532273 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAG 13540 || ||||| ||||| | ||||||| || |||||||| | ||||| |||| | | Sbjct 2532274 AAGCCATAGAAACAGCGTGCCTCTGTCACTTGAACTTCTTGGCTAAATCGTTCTACGAGA 2532333 Query 13541 TTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAtttt 13600 || || ||||| || ||||| || || || || || | || |||| ||||| | | Sbjct 2532334 TTCTCATTAACGATACCGTCGGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGTGT 2532393 Query 13601 ttttCG 13606 || ||| Sbjct 2532394 TTCTCG 2532399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430716786624336