Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq12851 113 7e-20 >seq12851 Length=316 Score = 113 bits (124), Expect = 7e-20 Identities = 205/300 (68%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 43640 CCGTAGTCAAGCTGGCGAATTCGATTTTCTTCCACGCCCTTGTTGTTTTTCAGAACAAGG 43699 ||||| || | || || | || || |||||||||| |||||||| || || || Sbjct 308 CCGTAATCCATATGCCGCACCCGGTTGGCTTCCACGCCGCGATTGTTTTTTAGCACCAGC 249 Query 43700 ATTTTTTCAACTTCAAGATGCCACATTGGATAGTAAAGAGTAGCAGCGCCACCGCGTACA 43759 | |||| | || | ||||||||| |||||| | | || || ||||| ||||| || Sbjct 248 AGACTTTCGATCTCCAAATGCCACATAGGATAGAACAACGTGGCCGCGCCGCCGCGCACG 189 Query 43760 CCACCCTGTGAGCAACTTTTTACCGCAGTCTGGAAATATTTCCAGAACGGAATAATACCA 43819 || ||||| || || ||| ||||| |||||||||| ||| ||||||||||| ||| Sbjct 188 CCGCCCTGAGAACAGGATTTGACCGCGGTCTGGAAATGTTTATAGAACGGAATACAACCG 129 Query 43820 GTGTGGCGAACTTCACCACTTCGAATGCGAGAACCTTCGGCACGAATAGCGCCACCGTTG 43879 || ||| | |||| || | ||||| | || || || ||| ||| | ||| Sbjct 128 GTATGGAAAGCTTCGCCGCCGCGAATCGGGCTCCCCAACGCGCGGATACGGCCGGCATTG 69 Query 43880 ATACCGATACCAGCGCGTTTGCTAATATAGTCAACGATTGAACTTGCGGTAGCGTTAATG 43939 || || || || ||||| | | | ||| | || || | || | ||||||||||||| Sbjct 68 ATGCCTATCCCGGCGCGCTGGGATACATATTTTACAATCGCGCTGGAGGTAGCGTTAATG 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745749113832320