Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 102 7e-17
>seq16708
Length=1145218
Score = 102 bits (112), Expect = 7e-17
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| || | || | || |||||||| || |||||| ||||||||||| || | |
Sbjct 654043 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAC 654102
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
|| || | |||||||||||||| || || |||| |||||||||||||| ||
Sbjct 654103 AAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGA 654162
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| ||||| || | | | | || || || | || || || |
Sbjct 654163 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAG-AGGCTTCGAC 654221
Query 48680 -TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || |||||||| || |||||||| || || |||||||||||
Sbjct 654222 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269
Score = 96.9 bits (106), Expect = 3e-15
Identities = 164/235 (70%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 48493 GTCAAAACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTA 48552
||| | |||||| || | || | || | |||||| ||| ||||||||| ||||||||
Sbjct 653808 GTCCACACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTA 653867
Query 48553 ATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATC 48612
||||| | ||| | ||||| | |||||| || || | || ||||||||||||||
Sbjct 653868 ATCAGATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATC 653927
Query 48613 CACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGA 48672
|| | | ||||||||| ||||| || | | | | || || || | ||
Sbjct 653928 AGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAG-AGG 653986
Query 48673 CTCCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || | || | || |||||||| || |||||||| || || |||||||||||
Sbjct 653987 CTTCGACTTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
|| || | ||| | || || | |||||| ||| ||||| || || ||||||||||
Sbjct 1010561 CCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010620
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| | || | |||||||||||||| ||| | | ||||| || || |||||| ||
Sbjct 1010621 AGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGT 1010680
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | || |||||| |||||| ||||| | | | || ||||| | || |||
Sbjct 1010681 ATTCCCTCTTTGTCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACT 1010740
Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | ||| || || || || || | ||||||||||||||||||||
Sbjct 1010741 TCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 1010787
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559
||||| || | || | || | |||||| ||| ||||||||| |||||||||||||
Sbjct 654499 CCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 654558
Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619
| ||| | ||||| | |||||| || || | || |||||||||||||| ||
Sbjct 654559 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654618
Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679
| | ||||||||| ||||| || | | | | || || || | || || || |
Sbjct 654619 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAG-AGGCTTCGAC 654677
Query 48680 -TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| | || |||||||| || |||||||| || || |||||||||||
Sbjct 654678 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654725
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420991583938568
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |