Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_005905.1 Length=86462 Score E Sequences producing significant alignments: (Bits) Value seq1798 206 1e-48 seq12764 113 2e-20 seq43765 98.7 5e-16 seq43671 93.3 2e-14 >seq1798 Length=819868 Score = 206 bits (228), Expect = 1e-48 Identities = 359/516 (70%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 3617 AATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATG 3676 ||||||||| |||| || || || || || ||||| |||||||||||||| || || | Sbjct 506285 AATGAATTGTTATACTTCGCGGATGTGTGTGCTGGGCCAGGTGGTTTCAGCGAGTACGTT 506344 Query 3677 TTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGAT 3736 |||||||| || || ||| ||||| | ||| | || || | |||| || Sbjct 506345 TTATGGAGGAAAAAGTGGCGCGCGAAAGGATTTGGCTTTACTTTGAAGAACGAAAACGAC 506404 Query 3737 TTTCAACTGAACAGA-TTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGTCC 3795 ||| || || |||| ||||| | | || ||||| || |||||||||||||| || Sbjct 506405 TTTAAATTGG-CAGACTTTTATGCGGGCCCTTGTGAAACATTTCACCCGTATTATGGACC 506463 Query 3796 GCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAA--TGATT 3853 | | |||||| || | || || | ||||| | ||| |||| |||| | || Sbjct 506464 GAAGGATGATGGTGATGTTTATGATCCTAGTAATCA-AGAGGCTTTT-AGAAATCTTATA 506521 Query 3854 ATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTT 3913 |||| | |||| || ||||| |||||||| |||||| | || || || || || || Sbjct 506522 ATGACACATACTCGTGGCAAAGGAGTACATTTCATGATGTCCGATGGAGGATTTTCAGTA 506581 Query 3914 GAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTA 3973 || || ||||||||||| |||||||| | || ||| | |||| | || ||||| ||| Sbjct 506582 GAAGGCCAAGAAAATATACAAGAAATTCTTTCTAAACAATTGTACCTCTGCCAATGCTTA 506641 Query 3974 ATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTT 4033 | ||| |||||||| || | || |||| || | ||||| |||||| | ||| Sbjct 506642 GTAGCACTGATGATCGTAAGGGAGAAAGGACATTTCGTCACGAAATTGTTCGATGTTTTT 506701 Query 4034 ACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATT 4093 || || || ||||| |||||||| ||||| ||||| | | || | |||| ||| Sbjct 506702 ACGCCGTTCAGTGCGGGTTTAGTTTATTTAATGTACCGCTGCTTCGAGGAGGTTTGCATT 506761 Query 4094 TTCAAACCACATTCATCGCGACCGGCCAATTCTGAA 4129 ||||||||| |||| || |||| || ||||| ||| Sbjct 506762 TTCAAACCAAATTCTTCTAGACCAGCGAATTCGGAA 506797 >seq12764 Length=316 Score = 113 bits (124), Expect = 2e-20 Identities = 217/314 (69%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 3629 TATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAG 3688 || || || || || || ||||| |||||||||||||| || || | |||||||| || Sbjct 316 TACTTCGCGGATGTGTGTGCTGGGCCAGGTGGTTTCAGCGAGTACGTTTTATGGAGGAAA 257 Query 3689 AAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGATTTTCAACTGAAC 3748 || ||| ||||| | ||| | || || | |||| || ||| || || | Sbjct 256 AAGTGGCGCGCGAAAGGATTTGGCTTTACTTTGAAGAACGAAAACGACTTTAAATTGG-C 198 Query 3749 AGA-TTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGG 3807 ||| ||||| | | || ||||| || |||||||||||||| ||| | ||||| Sbjct 197 AGACTTTTATGCGGGCCCTTGTGAAACATTTCACCCGTATTATGGACCGAAGGATGATGG 138 Query 3808 TAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATG--ATTATGAAAGATACC 3865 | || | || || | ||||| | ||| |||| ||||| || |||| | |||| Sbjct 137 TGATGTTTATGATCCTAGTAATCA-AGAGGCTTTTA-GAAATCTTATAATGACACATACT 80 Query 3866 GAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAA 3925 || ||||| |||||||| |||||| | || || || || || || || || |||||| Sbjct 79 CGTGGCAAAGGAGTACATTTCATGATGTCCGATGGAGGATTTTCAGTAGAAGGCCAAGAA 20 Query 3926 AATATGCAAGAAAT 3939 ||||| |||||||| Sbjct 19 AATATACAAGAAAT 6 >seq43765 Length=202 Score = 98.7 bits (108), Expect = 5e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 3890 ATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAA 3949 ||| | || || || || || || || || ||||||||||| |||||||| | || ||| Sbjct 202 ATGTCCGATGGAGGATTTTCAGTAGAAGGCCAAGAAAATATACAAGAAATTCTTTCTAAA 143 Query 3950 AAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGT 4009 | |||| | || ||||| ||| | ||| |||||||| || | || |||| Sbjct 142 CAATTGTACCTCTGCCAATGCTTAGTAGCACTGATGATCGTAAGGGAGAAAGGACATTTC 83 Query 4010 GTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTA 4068 || | ||||| |||||| | ||||| || || ||||| |||||||| ||||| ||||| Sbjct 82 GTCACGAAATTGTTCGATGTTTTTACGCCGTTCAGTGCGGGTTTAGTTTATTTAATGTA 24 >seq43671 Length=202 Score = 93.3 bits (102), Expect = 2e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 3890 ATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAA 3949 ||| | || || || || || || || || ||||||||||| |||||||| | | ||| Sbjct 202 ATGTCCGATGGAGGATTTTCAGTAGAAGGCCAAGAAAATATACAAGAAATTCTTTTTAAA 143 Query 3950 AAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGT 4009 | |||| | || ||||| ||| | ||| |||||||| || | || |||| Sbjct 142 CAATTGTACCTCTGCCAATGCTTAGTAGCACTGATGATCGTAAGGGAGAAAGGACATTTC 83 Query 4010 GTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTA 4068 || | || || |||||| | |||||||| || ||||| |||||||| ||||| ||||| Sbjct 82 GTCACGAACTTGTTCGATGTTTTTACACCGTTCAGTGCGGGTTTAGTTTATTTAATGTA 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 276383160707704