Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_005905.1
Length=86462
Score E
Sequences producing significant alignments: (Bits) Value
seq1798 206 1e-48
seq12764 113 2e-20
seq43765 98.7 5e-16
seq43671 93.3 2e-14
>seq1798
Length=819868
Score = 206 bits (228), Expect = 1e-48
Identities = 359/516 (70%), Gaps = 6/516 (1%)
Strand=Plus/Plus
Query 3617 AATGAATTGATATATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATG 3676
||||||||| |||| || || || || || ||||| |||||||||||||| || || |
Sbjct 506285 AATGAATTGTTATACTTCGCGGATGTGTGTGCTGGGCCAGGTGGTTTCAGCGAGTACGTT 506344
Query 3677 TTATGGAGAAAGAAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGAT 3736
|||||||| || || ||| ||||| | ||| | || || | |||| ||
Sbjct 506345 TTATGGAGGAAAAAGTGGCGCGCGAAAGGATTTGGCTTTACTTTGAAGAACGAAAACGAC 506404
Query 3737 TTTCAACTGAACAGA-TTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGTCC 3795
||| || || |||| ||||| | | || ||||| || |||||||||||||| ||
Sbjct 506405 TTTAAATTGG-CAGACTTTTATGCGGGCCCTTGTGAAACATTTCACCCGTATTATGGACC 506463
Query 3796 GCTTAACGATGGTAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAA--TGATT 3853
| | |||||| || | || || | ||||| | ||| |||| |||| | ||
Sbjct 506464 GAAGGATGATGGTGATGTTTATGATCCTAGTAATCA-AGAGGCTTTT-AGAAATCTTATA 506521
Query 3854 ATGAAAGATACCGAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTT 3913
|||| | |||| || ||||| |||||||| |||||| | || || || || || ||
Sbjct 506522 ATGACACATACTCGTGGCAAAGGAGTACATTTCATGATGTCCGATGGAGGATTTTCAGTA 506581
Query 3914 GAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAAAAGATGTATTTGTGTCAATGTTTA 3973
|| || ||||||||||| |||||||| | || ||| | |||| | || ||||| |||
Sbjct 506582 GAAGGCCAAGAAAATATACAAGAAATTCTTTCTAAACAATTGTACCTCTGCCAATGCTTA 506641
Query 3974 ATTGCATTGATGATCATACGAATTGGTGGTCATTGTGTTATCAAATTTTTCGATATATTT 4033
| ||| |||||||| || | || |||| || | ||||| |||||| | |||
Sbjct 506642 GTAGCACTGATGATCGTAAGGGAGAAAGGACATTTCGTCACGAAATTGTTCGATGTTTTT 506701
Query 4034 ACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTATAGATCTTTTAATCGTATTTGTATT 4093
|| || || ||||| |||||||| ||||| ||||| | | || | |||| |||
Sbjct 506702 ACGCCGTTCAGTGCGGGTTTAGTTTATTTAATGTACCGCTGCTTCGAGGAGGTTTGCATT 506761
Query 4094 TTCAAACCACATTCATCGCGACCGGCCAATTCTGAA 4129
||||||||| |||| || |||| || ||||| |||
Sbjct 506762 TTCAAACCAAATTCTTCTAGACCAGCGAATTCGGAA 506797
>seq12764
Length=316
Score = 113 bits (124), Expect = 2e-20
Identities = 217/314 (69%), Gaps = 6/314 (2%)
Strand=Plus/Minus
Query 3629 TATTTTGCTGACGTATGCGCTGGTCCAGGTGGTTTCAGTGAATATATGTTATGGAGAAAG 3688
|| || || || || || ||||| |||||||||||||| || || | |||||||| ||
Sbjct 316 TACTTCGCGGATGTGTGTGCTGGGCCAGGTGGTTTCAGCGAGTACGTTTTATGGAGGAAA 257
Query 3689 AAATGGAATATCAAAGGTTATGGTATGACGTTACGCGaaaaaaaTGATTTTCAACTGAAC 3748
|| ||| ||||| | ||| | || || | |||| || ||| || || |
Sbjct 256 AAGTGGCGCGCGAAAGGATTTGGCTTTACTTTGAAGAACGAAAACGACTTTAAATTGG-C 198
Query 3749 AGA-TTTTACGATAACTTTTCGGAAACTTTACACCCGTATTATGGTCCGCTTAACGATGG 3807
||| ||||| | | || ||||| || |||||||||||||| ||| | |||||
Sbjct 197 AGACTTTTATGCGGGCCCTTGTGAAACATTTCACCCGTATTATGGACCGAAGGATGATGG 138
Query 3808 TAATATCTACAATTCACAAAATCAGAAAGGTTTTTGTGAAATG--ATTATGAAAGATACC 3865
| || | || || | ||||| | ||| |||| ||||| || |||| | ||||
Sbjct 137 TGATGTTTATGATCCTAGTAATCA-AGAGGCTTTTA-GAAATCTTATAATGACACATACT 80
Query 3866 GAAGGAAAAGGTGTACATTTTATGATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAA 3925
|| ||||| |||||||| |||||| | || || || || || || || || ||||||
Sbjct 79 CGTGGCAAAGGAGTACATTTCATGATGTCCGATGGAGGATTTTCAGTAGAAGGCCAAGAA 20
Query 3926 AATATGCAAGAAAT 3939
||||| ||||||||
Sbjct 19 AATATACAAGAAAT 6
>seq43765
Length=202
Score = 98.7 bits (108), Expect = 5e-16
Identities = 129/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 3890 ATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAA 3949
||| | || || || || || || || || ||||||||||| |||||||| | || |||
Sbjct 202 ATGTCCGATGGAGGATTTTCAGTAGAAGGCCAAGAAAATATACAAGAAATTCTTTCTAAA 143
Query 3950 AAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGT 4009
| |||| | || ||||| ||| | ||| |||||||| || | || ||||
Sbjct 142 CAATTGTACCTCTGCCAATGCTTAGTAGCACTGATGATCGTAAGGGAGAAAGGACATTTC 83
Query 4010 GTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTA 4068
|| | ||||| |||||| | ||||| || || ||||| |||||||| ||||| |||||
Sbjct 82 GTCACGAAATTGTTCGATGTTTTTACGCCGTTCAGTGCGGGTTTAGTTTATTTAATGTA 24
>seq43671
Length=202
Score = 93.3 bits (102), Expect = 2e-14
Identities = 128/179 (72%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 3890 ATGGCTGACGGTGGGTTCTCGGTTGAGGGTCAAGAAAATATGCAAGAAATGTTATCGAAA 3949
||| | || || || || || || || || ||||||||||| |||||||| | | |||
Sbjct 202 ATGTCCGATGGAGGATTTTCAGTAGAAGGCCAAGAAAATATACAAGAAATTCTTTTTAAA 143
Query 3950 AAGATGTATTTGTGTCAATGTTTAATTGCATTGATGATCATACGAATTGGTGGTCATTGT 4009
| |||| | || ||||| ||| | ||| |||||||| || | || ||||
Sbjct 142 CAATTGTACCTCTGCCAATGCTTAGTAGCACTGATGATCGTAAGGGAGAAAGGACATTTC 83
Query 4010 GTTATCAAATTTTTCGATATATTTACACCTTTTAGTGCTGGTTTAGTGTATTTGATGTA 4068
|| | || || |||||| | |||||||| || ||||| |||||||| ||||| |||||
Sbjct 82 GTCACGAACTTGTTCGATGTTTTTACACCGTTCAGTGCGGGTTTAGTTTATTTAATGTA 24
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 276383160707704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |