Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq34805 123 1e-23
seq22486 123 1e-23
seq11060 123 1e-23
seq12801 116 2e-21
seq35712 89.7 3e-13
>seq34805
Length=2019
Score = 123 bits (136), Expect = 1e-23
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1349 AAAATAGAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 1408
Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530
||| |||||||||||||||||||||
Sbjct 1409 TCTAACCAACTGAGCTAATGGGCCG 1433
>seq22486
Length=556944
Score = 123 bits (136), Expect = 1e-23
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 347504 AAAATAGAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 347445
Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530
||| |||||||||||||||||||||
Sbjct 347444 TCTAACCAACTGAGCTAATGGGCCG 347420
Score = 116 bits (128), Expect = 2e-21
Identities = 77/85 (91%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| || |||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 361726 AAAAAT-AATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 361668
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 361667 CTCTAACCAACTGAGCTAATGGGCC 361643
>seq11060
Length=499173
Score = 123 bits (136), Expect = 1e-23
Identities = 85/97 (88%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||| ||||| || |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 65620 AATGAAAAAAAAACATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 65679
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537
|||||||| |||||||||||||||||||| | |||||
Sbjct 65680 GACGCTCTAACCAACTGAGCTAATGGGCCTTTGACGA 65716
>seq12801
Length=326504
Score = 116 bits (128), Expect = 2e-21
Identities = 80/90 (89%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 11441 AATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
|||| ||||| ||| |||||||||| |||||||||| ||||||||||||||||||||
Sbjct 261107 AATATAAAAAGAAAAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 261166
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||| ||||||||||||||| ||||
Sbjct 261167 CGACGCTCTAACCAACTGAGCTAATAGGCC 261196
>seq35712
Length=218
Score = 89.7 bits (98), Expect = 3e-13
Identities = 50/51 (98%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 6 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 56
Lambda K H
0.638 0.410 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261330043627168
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |