Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq34805 123 1e-23 seq22486 123 1e-23 seq11060 123 1e-23 seq12801 116 2e-21 seq35712 89.7 3e-13 >seq34805 Length=2019 Score = 123 bits (136), Expect = 1e-23 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 1349 AAAATAGAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 1408 Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530 ||| ||||||||||||||||||||| Sbjct 1409 TCTAACCAACTGAGCTAATGGGCCG 1433 >seq22486 Length=556944 Score = 123 bits (136), Expect = 1e-23 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| Sbjct 347504 AAAATAGAATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGC 347445 Query 11506 TCTRACCAACTGAGCTAATGGGCCG 11530 ||| ||||||||||||||||||||| Sbjct 347444 TCTAACCAACTGAGCTAATGGGCCG 347420 Score = 116 bits (128), Expect = 2e-21 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || |||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 361726 AAAAAT-AATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACG 361668 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 361667 CTCTAACCAACTGAGCTAATGGGCC 361643 >seq11060 Length=499173 Score = 123 bits (136), Expect = 1e-23 Identities = 85/97 (88%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| ||||| || |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 65620 AATGAAAAAAAAACATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 65679 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 |||||||| |||||||||||||||||||| | ||||| Sbjct 65680 GACGCTCTAACCAACTGAGCTAATGGGCCTTTGACGA 65716 >seq12801 Length=326504 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| ||||| ||| |||||||||| |||||||||| |||||||||||||||||||| Sbjct 261107 AATATAAAAAGAAAAATGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 261166 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 261167 CGACGCTCTAACCAACTGAGCTAATAGGCC 261196 >seq35712 Length=218 Score = 89.7 bits (98), Expect = 3e-13 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 6 CGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCG 56 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261330043627168