Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 143 2e-29
seq21758 120 3e-22
seq901 84.2 2e-11
>seq16708
Length=1145218
Score = 143 bits (158), Expect = 2e-29
Identities = 178/242 (74%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| | | || ||| ||||||||||| | |||| || | ||| |||||||| || |
Sbjct 1010548 AAAAATCTGCATTCCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTAT 1010607
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
|| ||||| | ||||| | |||||||||||| |||||| |||||||||||| |
Sbjct 1010608 ATTGTAATCAG--AGAGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGT 1010665
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|| ||||| ||||| || || |||||||| | |||||| |||||||| | | ||
Sbjct 1010666 TGTTGATCCGGAGGTATTCCCTCTTTGTCCTGAATTTTGGCCTTGACATTCTCAATCGTA 1010725
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|||| ||||| || | ||||| || || ||||| | ||||||||||| ||||||
Sbjct 1010726 TCAGAAGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGC 1010785
Query 95006 AT 95007
||
Sbjct 1010786 AT 1010787
Score = 116 bits (128), Expect = 3e-21
Identities = 172/242 (71%), Gaps = 4/242 (2%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| | | || ||| ||||||||||| | |||| || | ||| |||||||| || |
Sbjct 1011004 AAAAATCTGCATTCCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTAT 1011063
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
|| ||||| | ||||| | ||| || || |||||||| | ||||| |||| |
Sbjct 1011064 ATTGTAATCAG--AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGT 1011121
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|| || || |||||||| ||||||||||| | |||||| ||||||||| | | ||
Sbjct 1011122 TGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTA 1011181
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|| | || || || | || || || |||||||| | ||| || ||||| ||||||
Sbjct 1011182 TCGGAAGCCTCAACCTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGC 1011241
Query 95006 AT 95007
||
Sbjct 1011242 AT 1011243
Score = 107 bits (118), Expect = 2e-18
Identities = 167/239 (70%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| | | || |||||| | | || || ||||| || | |||||| ||||| || | |
Sbjct 654031 AAAATCTGCATTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATG 654090
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| || || || ||| |||||||||||| || || | || || || | |||
Sbjct 654091 TTGTAGTCCGACAAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGC 654150
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
||||| |||||||| || || ||||| | ||||| || || || ||| ||||||
Sbjct 654151 TGATCAGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCA 654210
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | ||||| || | ||||||||||| || || ||||| || || || ||||||||
Sbjct 654211 GAGGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836
||| ||||||| | || || |||| || | || || |||||||| | ||| |||||
Sbjct 653811 CACACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATC 653870
Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894
|||| ||| | |||||| | ||| || || | ||||| || | ||||||||
Sbjct 653871 AG--ATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCA 653928
Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954
|||||||| || || ||||| | ||||| || || || ||| ||||||| |
Sbjct 653929 GGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCT 653988
Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || | ||||||||||| || || ||||| || || || ||||||||
Sbjct 653989 TCGACTTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041
Score = 104 bits (114), Expect = 2e-17
Identities = 167/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| | | || ||| ||||||| ||| | |||| || | || || || || || |
Sbjct 1010092 AAAAATCTGCATTCCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGAT 1010151
Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887
|||||||||| | || | ||| || || |||||||| | ||||| |||| |||
Sbjct 1010152 GTTATAATCGGAAAGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTG 1010211
Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947
|| || |||||||| ||||||||||| | |||||| |||||||| ||| |||||
Sbjct 1010212 TTGGTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTC 1010271
Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| || || || | || || ||||| || || | || || ||||| ||||||||
Sbjct 1010272 GGAAGCCTCAACCTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331
Score = 100 bits (110), Expect = 3e-16
Identities = 168/241 (70%), Gaps = 4/241 (2%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| | | || |||||| | | || || |||| || | || || |||||||| | |
Sbjct 654487 AAAATCTGCATTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATG 654546
Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886
|| ||||| |||| ||| | |||||| | ||| || || | ||||| || | |
Sbjct 654547 TTGTAATCAG--ATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCT 654604
Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946
||||||| |||||||| || || ||||| | ||||| || || || ||| ||||
Sbjct 654605 GCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGT 654664
Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006
||| | ||||| || | ||||||||||| || || ||||| || || || |||||||
Sbjct 654665 CAGAGGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCA 654724
Query 95007 T 95007
|
Sbjct 654725 T 654725
Score = 100 bits (110), Expect = 3e-16
Identities = 168/243 (69%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| | | || |||||| | | || || |||| || | || || |||||||| | |
Sbjct 654943 AAAATCTGCATTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATG 655002
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| ||||| | ||| |||||| || || || || | ||||| || | |||
Sbjct 655003 TTGTAATCAGAGAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGC 655062
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
||||| |||||||| ||||| || || | ||||| || || ||| ||| |||||
Sbjct 655063 TGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTGTCT 655122
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| ||||| || | ||||||||||| || || ||||| || |||||||||||||||
Sbjct 655123 GAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATG 655182
Query 95009 CTT 95011
||
Sbjct 655183 GTT 655185
Score = 100 bits (110), Expect = 3e-16
Identities = 171/246 (70%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827
|||| | | || ||| ||||||| ||| | |||| || | ||| |||||||| || |
Sbjct 1011232 AAAAATCTGCATTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTAT 1011291
Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885
|| ||||| | ||||| | ||| || || |||||||| | ||||| |||| |
Sbjct 1011292 ATTGTAATCAG--AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGT 1011349
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|| || || |||||||| ||||||||||| | |||||| ||||||||| | | ||
Sbjct 1011350 TGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTA 1011409
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|| | || || || | || || || || || || | || || || |||||||||
Sbjct 1011410 TCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGC 1011469
Query 95006 ATGCTT 95011
||| ||
Sbjct 1011470 ATGATT 1011475
Score = 96.9 bits (106), Expect = 3e-15
Identities = 142/199 (71%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868
|| || ||||| || | ||||||||| | ||||| | ||| || | ||| ||||
Sbjct 1009907 GTCGACTCCTTCTGGATGTTATAATCAG--AAAGTGTGCGTCCATCTTCTAACTGCTTTC 1009964
Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928
| | ||||| ||||||||||| || || ||||| ||||||||||| | |||||| || |
Sbjct 1009965 CAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCTTCTTTGTCTTGAATTTTAGCTT 1010024
Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988
| || ||| || || | ||||| || | ||||| || || ||||| ||||
Sbjct 1010025 TCACATTTTCGATGGTATCGGACGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAGAG 1010084
Query 94989 TTTTCACAAAGATCTGCAT 95007
| || ||||| ||||||||
Sbjct 1010085 TCTTAACAAAAATCTGCAT 1010103
>seq21758
Length=261
Score = 120 bits (132), Expect = 3e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||||||||| |||||| |||||||||||| ||| ||||| ||||| || || |||||
Sbjct 254 ATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTT 195
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
||| | |||||| |||||||| | | || |||| ||||| || | |||||
Sbjct 194 GTCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGAT 135
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || ||||| | ||||||||||| ||||||||
Sbjct 134 AGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 99
>seq901
Length=499
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945
|||||||| |||||||| ||||| || || | ||||| || || ||| ||| |||
Sbjct 9 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTG 68
Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005
|| | ||||| || | ||||||||||| || || ||||| || ||||||||||||
Sbjct 69 TCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGC 128
Query 95006 ATGCTT 95011
||| ||
Sbjct 129 ATGGTT 134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448007835132480
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