Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq16708 143 2e-29 seq21758 120 3e-22 seq901 84.2 2e-11 >seq16708 Length=1145218 Score = 143 bits (158), Expect = 2e-29 Identities = 178/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| ||||||||||| | |||| || | ||| |||||||| || | Sbjct 1010548 AAAAATCTGCATTCCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTAT 1010607 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || ||||| | ||||| | |||||||||||| |||||| |||||||||||| | Sbjct 1010608 ATTGTAATCAG--AGAGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGT 1010665 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || ||||| ||||| || || |||||||| | |||||| |||||||| | | || Sbjct 1010666 TGTTGATCCGGAGGTATTCCCTCTTTGTCCTGAATTTTGGCCTTGACATTCTCAATCGTA 1010725 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 |||| ||||| || | ||||| || || ||||| | ||||||||||| |||||| Sbjct 1010726 TCAGAAGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGC 1010785 Query 95006 AT 95007 || Sbjct 1010786 AT 1010787 Score = 116 bits (128), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| ||||||||||| | |||| || | ||| |||||||| || | Sbjct 1011004 AAAAATCTGCATTCCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTAT 1011063 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || ||||| | ||||| | ||| || || |||||||| | ||||| |||| | Sbjct 1011064 ATTGTAATCAG--AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGT 1011121 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || |||||||| ||||||||||| | |||||| ||||||||| | | || Sbjct 1011122 TGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTA 1011181 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | || || || |||||||| | ||| || ||||| |||||| Sbjct 1011182 TCGGAAGCCTCAACCTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGC 1011241 Query 95006 AT 95007 || Sbjct 1011242 AT 1011243 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| | | || || ||||| || | |||||| ||||| || | | Sbjct 654031 AAAATCTGCATTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATG 654090 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || ||| |||||||||||| || || | || || || | ||| Sbjct 654091 TTGTAGTCCGACAAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGC 654150 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| |||||||| || || ||||| | ||||| || || || ||| |||||| Sbjct 654151 TGATCAGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCA 654210 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | ||||||||||| || || ||||| || || || |||||||| Sbjct 654211 GAGGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 ||| ||||||| | || || |||| || | || || |||||||| | ||| ||||| Sbjct 653811 CACACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATC 653870 Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 |||| ||| | |||||| | ||| || || | ||||| || | |||||||| Sbjct 653871 AG--ATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCA 653928 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 |||||||| || || ||||| | ||||| || || || ||| ||||||| | Sbjct 653929 GGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCT 653988 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || | ||||||||||| || || ||||| || || || |||||||| Sbjct 653989 TCGACTTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| ||||||| ||| | |||| || | || || || || || | Sbjct 1010092 AAAAATCTGCATTCCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGAT 1010151 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 |||||||||| | || | ||| || || |||||||| | ||||| |||| ||| Sbjct 1010152 GTTATAATCGGAAAGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTG 1010211 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 || || |||||||| ||||||||||| | |||||| |||||||| ||| ||||| Sbjct 1010212 TTGGTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTC 1010271 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || ||||| || || | || || ||||| |||||||| Sbjct 1010272 GGAAGCCTCAACCTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331 Score = 100 bits (110), Expect = 3e-16 Identities = 168/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| | | || || |||| || | || || |||||||| | | Sbjct 654487 AAAATCTGCATTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATG 654546 Query 94829 TTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTT 94886 || ||||| |||| ||| | |||||| | ||| || || | ||||| || | | Sbjct 654547 TTGTAATCAG--ATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCT 654604 Query 94887 GCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGT 94946 ||||||| |||||||| || || ||||| | ||||| || || || ||| |||| Sbjct 654605 GCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGT 654664 Query 94947 CAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCA 95006 ||| | ||||| || | ||||||||||| || || ||||| || || || ||||||| Sbjct 654665 CAGAGGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCA 654724 Query 95007 T 95007 | Sbjct 654725 T 654725 Score = 100 bits (110), Expect = 3e-16 Identities = 168/243 (69%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || |||||| | | || || |||| || | || || |||||||| | | Sbjct 654943 AAAATCTGCATTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATG 655002 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| | ||| |||||| || || || || | ||||| || | ||| Sbjct 655003 TTGTAATCAGAGAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGC 655062 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||| |||||||| ||||| || || | ||||| || || ||| ||| ||||| Sbjct 655063 TGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTGTCT 655122 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| || | ||||||||||| || || ||||| || ||||||||||||||| Sbjct 655123 GAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATG 655182 Query 95009 CTT 95011 || Sbjct 655183 GTT 655185 Score = 100 bits (110), Expect = 3e-16 Identities = 171/246 (70%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| | | || ||| ||||||| ||| | |||| || | ||| |||||||| || | Sbjct 1011232 AAAAATCTGCATTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTAT 1011291 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 || ||||| | ||||| | ||| || || |||||||| | ||||| |||| | Sbjct 1011292 ATTGTAATCAG--AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGT 1011349 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || || |||||||| ||||||||||| | |||||| ||||||||| | | || Sbjct 1011350 TGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTA 1011409 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | || || || || || || | || || || ||||||||| Sbjct 1011410 TCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGC 1011469 Query 95006 ATGCTT 95011 ||| || Sbjct 1011470 ATGATT 1011475 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTC 94868 || || ||||| || | ||||||||| | ||||| | ||| || | ||| |||| Sbjct 1009907 GTCGACTCCTTCTGGATGTTATAATCAG--AAAGTGTGCGTCCATCTTCTAACTGCTTTC 1009964 Query 94869 CGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCT 94928 | | ||||| ||||||||||| || || ||||| ||||||||||| | |||||| || | Sbjct 1009965 CAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCTTCTTTGTCTTGAATTTTAGCTT 1010024 Query 94929 TGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAG 94988 | || ||| || || | ||||| || | ||||| || || ||||| |||| Sbjct 1010025 TCACATTTTCGATGGTATCGGACGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAGAG 1010084 Query 94989 TTTTCACAAAGATCTGCAT 95007 | || ||||| |||||||| Sbjct 1010085 TCTTAACAAAAATCTGCAT 1010103 >seq21758 Length=261 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| |||||| |||||||||||| ||| ||||| ||||| || || ||||| Sbjct 254 ATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTT 195 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| |||||||| | | || |||| ||||| || | ||||| Sbjct 194 GTCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGAT 135 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| | ||||||||||| |||||||| Sbjct 134 AGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 99 >seq901 Length=499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||| || || | ||||| || || ||| ||| ||| Sbjct 9 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTG 68 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | ||||| || | ||||||||||| || || ||||| || |||||||||||| Sbjct 69 TCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGC 128 Query 95006 ATGCTT 95011 ||| || Sbjct 129 ATGGTT 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448007835132480