Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq11060 188 1e-43
seq3560 170 3e-38
seq46035 165 1e-36
>seq11060
Length=499173
Score = 188 bits (208), Expect = 1e-43
Identities = 202/267 (76%), Gaps = 0/267 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||| | | | ||||| ||||||||||| ||||| || || |||||||||
Sbjct 3949 GCGAAGCGTCATAGAAAAGTCCTTCGTGATAACATCCAGGGAATAACTAAACCAGCTATC 4008
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| |||||||| ||||| ||||||||| | ||||||||| |||| ||||| |
Sbjct 4009 CGTCGTCTTGCTCGTCGCGGTGGTGTCAAGCGTATATCTGGATTGATCTACGAAGAAACG 4068
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | ||||||||| | ||||| ||| ||| || | ||| || || || |||||
Sbjct 4069 AGAGGTGTTTTGAAAGTGTTCCTTGAGAACGTCATTCGTGACGCCGTCACGTACACCGAA 4128
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| | ||||| || || | ||||| ||||||| || ||||||| || |||
Sbjct 4129 CACGCTAAGAGAAAGACCGTAACAGCAATGGACGTCGTCTACGCTCTGAAACGCCAGGGC 4188
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | ||||||||||| |||||
Sbjct 4189 AGAACCCTCTATGGTTTTGGTGGTTAA 4215
>seq3560
Length=9601
Score = 170 bits (188), Expect = 3e-38
Identities = 198/267 (74%), Gaps = 0/267 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||| | | | ||||| ||||||||||| ||||| || || |||||||||
Sbjct 477 GCGAAGCGTCATAGGAAAGTCCTTCGTGATAACATCCAGGGAATAACTAAACCAGCTATC 418
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|||||||| |||||||| ||||| ||||||||| | ||||||||| | || ||||| |
Sbjct 417 CGTCGTCTTGCTCGTCGCGGTGGTGTCAAGCGTATATCTGGATTGATTTACGAAGAAACG 358
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
| | ||| || || | ||||| ||| ||| || | ||| || || || |||||
Sbjct 357 AGAGGTGTGTTAAAAGTGTTCCTTGAGAACGTCATTCGTGACGCCGTCACGTACACCGAA 298
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|||||||| | ||||| || || | ||||| ||||||| || ||||||| || |||
Sbjct 297 CACGCTAAGAGAAAGACCGTAACAGCAATGGACGTCGTCTACGCTCTGAAACGCCAGGGC 238
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699
| | | || |||||||| |||||
Sbjct 237 AGAACTCTCTACGGTTTTGGTGGTTAA 211
>seq46035
Length=1229184
Score = 165 bits (182), Expect = 1e-36
Identities = 184/246 (75%), Gaps = 0/246 (0%)
Strand=Plus/Minus
Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513
||||| |||||||||||||| ||||| ||||| || ||||||||| ||||| | |||||
Sbjct 1220708 CTTCGTGATAACATCCAAGGTATCACGAAGCCTGCCATCCGTCGTTTGGCTAGACGTGGC 1220649
Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573
|| || || ||| |||| || || | || ||||| | ||||| ||| | ||| ||||
Sbjct 1220648 GGCGTAAAACGTATCTCCGGTCTGATTTACGAAGAAACTCGTGGTGTACTCAAGGTCTTT 1220589
Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633
||| ||| ||| |||| ||||||| | ||| ||||| || || || | ||||||||
Sbjct 1220588 CTCGAGAACGTCATCCGTGATGCTGTTACCTACACCGAACATGCGAAGAGGAAGACTGTG 1220529
Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693
||| ||||||| | ||||| || ||||||| ||||| | | |||| || || ||
Sbjct 1220528 ACCGCCATGGACGTGGTCTACGCCCTGAAACGACAAGGAAGAACCCTTTACGGCTTCGGC 1220469
Query 16694 AGTTAA 16699
|||||
Sbjct 1220468 GGTTAA 1220463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79028965323624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |