Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq11060 188 1e-43 seq3560 170 3e-38 seq46035 165 1e-36 >seq11060 Length=499173 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | ||||| ||||||||||| ||||| || || ||||||||| Sbjct 3949 GCGAAGCGTCATAGAAAAGTCCTTCGTGATAACATCCAGGGAATAACTAAACCAGCTATC 4008 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||| ||||| ||||||||| | ||||||||| |||| ||||| | Sbjct 4009 CGTCGTCTTGCTCGTCGCGGTGGTGTCAAGCGTATATCTGGATTGATCTACGAAGAAACG 4068 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||| | ||||| ||| ||| || | ||| || || || ||||| Sbjct 4069 AGAGGTGTTTTGAAAGTGTTCCTTGAGAACGTCATTCGTGACGCCGTCACGTACACCGAA 4128 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | ||||| || || | ||||| ||||||| || ||||||| || ||| Sbjct 4129 CACGCTAAGAGAAAGACCGTAACAGCAATGGACGTCGTCTACGCTCTGAAACGCCAGGGC 4188 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||||||||| ||||| Sbjct 4189 AGAACCCTCTATGGTTTTGGTGGTTAA 4215 >seq3560 Length=9601 Score = 170 bits (188), Expect = 3e-38 Identities = 198/267 (74%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||| | | | ||||| ||||||||||| ||||| || || ||||||||| Sbjct 477 GCGAAGCGTCATAGGAAAGTCCTTCGTGATAACATCCAGGGAATAACTAAACCAGCTATC 418 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||| ||||| ||||||||| | ||||||||| | || ||||| | Sbjct 417 CGTCGTCTTGCTCGTCGCGGTGGTGTCAAGCGTATATCTGGATTGATTTACGAAGAAACG 358 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||| || || | ||||| ||| ||| || | ||| || || || ||||| Sbjct 357 AGAGGTGTGTTAAAAGTGTTCCTTGAGAACGTCATTCGTGACGCCGTCACGTACACCGAA 298 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||||| | ||||| || || | ||||| ||||||| || ||||||| || ||| Sbjct 297 CACGCTAAGAGAAAGACCGTAACAGCAATGGACGTCGTCTACGCTCTGAAACGCCAGGGC 238 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || |||||||| ||||| Sbjct 237 AGAACTCTCTACGGTTTTGGTGGTTAA 211 >seq46035 Length=1229184 Score = 165 bits (182), Expect = 1e-36 Identities = 184/246 (75%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| |||||||||||||| ||||| ||||| || ||||||||| ||||| | ||||| Sbjct 1220708 CTTCGTGATAACATCCAAGGTATCACGAAGCCTGCCATCCGTCGTTTGGCTAGACGTGGC 1220649 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || || ||| |||| || || | || ||||| | ||||| ||| | ||| |||| Sbjct 1220648 GGCGTAAAACGTATCTCCGGTCTGATTTACGAAGAAACTCGTGGTGTACTCAAGGTCTTT 1220589 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||||||| | ||| ||||| || || || | |||||||| Sbjct 1220588 CTCGAGAACGTCATCCGTGATGCTGTTACCTACACCGAACATGCGAAGAGGAAGACTGTG 1220529 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 ||| ||||||| | ||||| || ||||||| ||||| | | |||| || || || Sbjct 1220528 ACCGCCATGGACGTGGTCTACGCCCTGAAACGACAAGGAAGAACCCTTTACGGCTTCGGC 1220469 Query 16694 AGTTAA 16699 ||||| Sbjct 1220468 GGTTAA 1220463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79028965323624