Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq47120 86.0 1e-12 seq28604 84.2 4e-12 seq20168 84.2 4e-12 seq25641 82.4 1e-11 >seq47120 Length=735 Score = 86.0 bits (94), Expect = 1e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 7973 CACATACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGA 8032 ||| ||||||| ||||| | ||| || || ||||| ||||| || | |||||||| Sbjct 80 CACGTACCAGGATATCAATTCTGTGGACCCGGTACGCGGTTAGAAAAATGTTTAGCTCGT 139 Query 8033 GGTGATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATAT 8082 || ||| ||||||||||||| |||||| | || |||| || |||||||| Sbjct 140 GGCGATCCAGGTATAAATCCATTGGACACAGCCTGTAGAGAGCACGATAT 189 >seq28604 Length=3369 Score = 84.2 bits (92), Expect = 4e-12 Identities = 118/165 (72%), Gaps = 3/165 (2%) Strand=Plus/Minus Query 7973 CACATACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGA 8032 ||| ||||||| ||||| | |||||| || | ||| |||| || | ||||||| Sbjct 843 CACGTACCAGGATATCAATTCTGCGGACCCGATACGCGCTTAGAAAAACGTTTAGCTCAC 784 Query 8033 GGTGATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTCA 8092 |||||| ||||||||||||| |||| | || |||| || |||||||| || ||||| Sbjct 783 GGTGATCCAGGTATAAATCCACTGGATACAGCCTGTAGAGAGCACGATATTGCATACTCT 724 Query 8093 AAAAATCGTGAAAATTTGGAAGCTCGTCACGAGGCTGATAAAATT 8137 ||| || ||||| | ||||||| |||| ||| || || Sbjct 723 CGAAA---CAAAGATTTGACAAATCGTCACAAGGCAGATCAAGTT 682 >seq20168 Length=268 Score = 84.2 bits (92), Expect = 4e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 7973 CACATACCAGGTTATCAGTACTGCGGTCCGGGTACAAAGTTAGCCAAGAGATTAGCTCGA 8032 ||| ||||||| ||||| | ||| || | ||||| | |||| || | |||||||| Sbjct 168 CACGTACCAGGATATCAATTCTGTGGATCCGGTACGATCTTAGAAAAACGTTTAGCTCGT 109 Query 8033 GGTGATTCAGGTATAAATCCTTTGGACGCTGCGTGTAAGGAACACGATATAGCTTACTC 8091 || ||| ||||||||||||| |||||| || |||| || |||||||| || ||||| Sbjct 108 GGCGATCCAGGTATAAATCCATTGGACATAGCTTGTAGAGAGCACGATATTGCATACTC 50 >seq25641 Length=246 Score = 82.4 bits (90), Expect = 1e-11 Identities = 152/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 7266 GTATGGCATGTCCGTATTGACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTG 7325 |||||||||||| || || ||||| | || ||| |||| || ||||| || |||| || Sbjct 30 GTATGGCATGTCGGTGTTCACATGGTTATTATATGTATGTTTTAGATTGGTTCCATCCTG 89 Query 7326 ACGGAACAGCACGAGAAAGTTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATA 7385 ||||| | || | | ||| | || | || || || ||||| ||| | ||| Sbjct 90 CTTAAACAGAATCAGCAGAATCGCACTGTCGCGTATAAGATGTTTGGGAATTTTAGCATA 149 Query 7386 AGTTTGACAGAGATAGAAGCTGTCAACATCCTTGTGTCGACCCA-TGCAGAAAAAAGCTT 7444 |||||||||||||| |||| ||||| | | |||| ||||| |||| ||| | | Sbjct 150 TGTTTGACAGAGATAAAAGCAATCAACGTACGAGTGTTTACCCATTGCA-AAATATTCGC 208 Query 7445 TGAT-GTGATCCTGTTTTTCACAAGCAACATCGTCAAA 7481 || ||| |||||||| || || || || || ||||| Sbjct 209 GTATCGTG-TCCTGTTTATCGCATGCTACGTCATCAAA 245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97915566862672