Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10733 116 5e-21 seq48246 84.2 3e-11 seq2114 82.4 1e-10 >seq10733 Length=171697 Score = 116 bits (128), Expect = 5e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 62324 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62383 ||| |||||||| |||||||| ||||| ||||| ||||| | || |||||||| |||| Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751 Query 62384 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62443 ||| ||||| | || ||||||||||| | || || || || || || || |||||||| Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811 Query 62444 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62503 || | | ||| ||| |||| |||| | | ||| || ||||| | | | |||| Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871 Query 62504 ATTCCAAAGATCCG 62517 || ||| | ||||| Sbjct 125872 ATCCCATAAATCCG 125885 Score = 102 bits (112), Expect = 1e-16 Identities = 217/316 (69%), Gaps = 10/316 (3%) Strand=Plus/Plus Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || || ||||||||||||||||| | ||| | | |||||| | |||||| ||||| || Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 || | || | |||| || | || |||||||| ||||| | |||| ||| || || Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 ||||| |||| | ||| |||| | ||| || |||| |||| || | || ||| | Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811 Query 63462 --CTTCCACTGGCACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGA 63517 | || || || | ||| | || |||| || || || || || || |||| Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869 Query 63518 GATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGT 63576 || | ||| |||| |||||| || ||||| || || | || ||||| || ||| ||| Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929 Query 63577 TAAGTAGAAAACAGCT 63592 ||| |||||||| || Sbjct 126930 TAA-CAGAAAACAACT 126944 Score = 98.7 bits (108), Expect = 1e-15 Identities = 173/250 (69%), Gaps = 4/250 (2%) Strand=Plus/Plus Query 62875 TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62934 |||||||||| || | |||| || |||| ||| || ||||| || |||| | | | Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136 Query 62935 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 62994 |||||||| || || || || | |||||| || || || ||||||| |||||| |||| Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196 Query 62995 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63054 | || ||| || |||||||||||| || || ||||| || ||||||| || | Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256 Query 63055 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC 63114 | | || ||| |||| | | | | || | ||| ||||||||| |||||| Sbjct 126257 CAACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCT--TTTCTC 126314 Query 63115 --TTTCGTAT 63122 |||||||| Sbjct 126315 ATTTTCGTAT 126324 Score = 84.2 bits (92), Expect = 3e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185 ||||||| ||| || || || |||||||||| | || |||||| |||||| ||| Sbjct 126397 GTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGA 126456 Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245 ||||| || ||| | || | || |||||||||||||| |||||||| | ||| Sbjct 126457 CACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCAT 126516 Query 63246 AGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289 | | | || |||| ||||| | ||||||||||| || ||||| Sbjct 126517 A-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560 >seq48246 Length=3565318 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847 ||||||| | ||| ||||||||||| ||||| || || || ||||| ||||||||||| | Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| |||||| | || || || || | ||||||||| || || || Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTT 2532616 >seq2114 Length=466 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/174 (71%), Gaps = 8/174 (5%) Strand=Plus/Plus Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630 ||| |||| || ||||| | |||| || ||||||| ||||||||| || ||||| ||| Sbjct 261 CCTTCATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCA 320 Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690 | |||||| | ||||| || || | |||| || | ||| || || || |||||| Sbjct 321 CTGTAATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAAT 380 Query 62691 GGATA----ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 ||||| ||| || |||| || || || | ||||||| |||||||| Sbjct 381 GGATATCGCATTAAAAGGAAT----GCATCTGCCAGACCTTGAATTCCAATACC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622553435074880