Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 116 5e-21
seq48246 84.2 3e-11
seq2114 82.4 1e-10
>seq10733
Length=171697
Score = 116 bits (128), Expect = 5e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 62324 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62383
||| |||||||| |||||||| ||||| ||||| ||||| | || |||||||| ||||
Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751
Query 62384 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62443
||| ||||| | || ||||||||||| | || || || || || || || ||||||||
Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811
Query 62444 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62503
|| | | ||| ||| |||| |||| | | ||| || ||||| | | | ||||
Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871
Query 62504 ATTCCAAAGATCCG 62517
|| ||| | |||||
Sbjct 125872 ATCCCATAAATCCG 125885
Score = 102 bits (112), Expect = 1e-16
Identities = 217/316 (69%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341
|| || ||||||||||||||||| | ||| | | |||||| | |||||| ||||| ||
Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693
Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401
|| | || | |||| || | || |||||||| ||||| | |||| ||| || ||
Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753
Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461
||||| |||| | ||| |||| | ||| || |||| |||| || | || ||| |
Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811
Query 63462 --CTTCCACTGGCACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGA 63517
| || || || | ||| | || |||| || || || || || || ||||
Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869
Query 63518 GATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGT 63576
|| | ||| |||| |||||| || ||||| || || | || ||||| || ||| |||
Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929
Query 63577 TAAGTAGAAAACAGCT 63592
||| |||||||| ||
Sbjct 126930 TAA-CAGAAAACAACT 126944
Score = 98.7 bits (108), Expect = 1e-15
Identities = 173/250 (69%), Gaps = 4/250 (2%)
Strand=Plus/Plus
Query 62875 TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62934
|||||||||| || | |||| || |||| ||| || ||||| || |||| | | |
Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136
Query 62935 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGAT 62994
|||||||| || || || || | |||||| || || || ||||||| |||||| ||||
Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196
Query 62995 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 63054
| || ||| || |||||||||||| || || ||||| || ||||||| || |
Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256
Query 63055 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTC 63114
| | || ||| |||| | | | | || | ||| ||||||||| ||||||
Sbjct 126257 CAACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCT--TTTCTC 126314
Query 63115 --TTTCGTAT 63122
||||||||
Sbjct 126315 ATTTTCGTAT 126324
Score = 84.2 bits (92), Expect = 3e-11
Identities = 119/165 (72%), Gaps = 2/165 (1%)
Strand=Plus/Plus
Query 63126 GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGA 63185
||||||| ||| || || || |||||||||| | || |||||| |||||| |||
Sbjct 126397 GTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGA 126456
Query 63186 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63245
||||| || ||| | || | || |||||||||||||| |||||||| | |||
Sbjct 126457 CACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCAT 126516
Query 63246 AGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 63289
| | | || |||| ||||| | ||||||||||| || |||||
Sbjct 126517 A-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560
>seq48246
Length=3565318
Score = 84.2 bits (92), Expect = 3e-11
Identities = 84/109 (77%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 33788 CTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGT 33847
||||||| | ||| ||||||||||| ||||| || || || ||||| ||||||||||| |
Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567
Query 33848 TCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896
||| |||||| | || || || || | ||||||||| || || ||
Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTT 2532616
>seq2114
Length=466
Score = 82.4 bits (90), Expect = 1e-10
Identities = 123/174 (71%), Gaps = 8/174 (5%)
Strand=Plus/Plus
Query 62571 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62630
||| |||| || ||||| | |||| || ||||||| ||||||||| || ||||| |||
Sbjct 261 CCTTCATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCA 320
Query 62631 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 62690
| |||||| | ||||| || || | |||| || | ||| || || || ||||||
Sbjct 321 CTGTAATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAAT 380
Query 62691 GGATA----ATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740
||||| ||| || |||| || || || | ||||||| ||||||||
Sbjct 381 GGATATCGCATTAAAAGGAAT----GCATCTGCCAGACCTTGAATTCCAATACC 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622553435074880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |