Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq25081 114 1e-20 >seq25081 Length=1200 Score = 114 bits (126), Expect = 1e-20 Identities = 206/297 (69%), Gaps = 8/297 (3%) Strand=Plus/Minus Query 6926 CCATGTGTTAAATGACCACCGCAATCCAAAGACATCGCCAATACTGAATCGCCTGGACTC 6985 || || || |||||||||||| ||| | ||| ||| ||| | |||||| || | Sbjct 972 CCGTGGGTCAAATGACCACCGTGCGCCAGATTCATGCCCAGTACGGTATCGCCAGGCTGC 913 Query 6986 AGCAACGCATGGTA--AACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTG 7043 ||||| | ||||| ||| || ||| ||||| || || || || || || ||||| | Sbjct 912 AGCAATG--TGGTATAAACGGCGAAGTTGGCCTGGGAGCCCGAGTGAGGCTGCACGTTGG 855 Query 7044 CGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGG 7103 | ||| | | ||||| |||| ||||| ||||||||||| | ||| | | |||| Sbjct 854 CATAATCGGCGCCAAACAAGGCTTTGGCACGATCAATTGCCAGTTGCTCTACCACATCAA 795 Query 7104 CTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAA 7163 | | | | || |||||||| || || || || ||||| || ||||| ||||| ||||| | Sbjct 794 CATATTCGCATCCGCCGTAGTAGCGCTTCCCGGGATAGCCTTCAGCGTACTTATTGGTCA 735 Query 7164 AAATAGAACCTTGCGCTTTCATAACATCATCGGAC--ACATAGTTTTCGGATGCAAT 7218 ||||| || || | |||||| ||||| |||||||| |||||||| Sbjct 734 GTTGTGAACCCTGTGCCTGCATAAC--GCGCGGACTGGTGTAGTTTTCAGATGCAAT 680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553003825189440