Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq16708 138 1e-27 seq21718 109 5e-19 seq36416 93.3 4e-14 >seq16708 Length=1145218 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | |||||||| || || || || ||| |||| ||| |||| || ||||| Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| |||||| | ||||| || ||| ||||||||||| || ||||| || || Sbjct 1010272 CGACACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1010213 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| || |||| | || || || ||||||||||||| |||| | ||||||||| Sbjct 1010212 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAA 1010153 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || ||||| || || ||||| | || || || ||||||| ||| Sbjct 1010152 CATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGGA 1010104 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || ||||| || || || |||| ||| |||| || ||||| Sbjct 1010560 AATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010501 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| || |||||| | ||||| |||||| |||||||| || |||||||| || || Sbjct 1010500 CGATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGAATACCTCCGGACCA 1010441 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||||||| | || || || ||||||||||||| | | || ||||| || Sbjct 1010440 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCTCTGATTACAA 1010381 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||||| || ||||| | || || || ||||||| ||| Sbjct 1010380 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGA 1010332 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || |||||||| |||| ||| |||| || ||||| Sbjct 1011244 AATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTC 1011185 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| || || ||| | ||||| || ||| ||||||||||| || ||||| || || Sbjct 1011184 CGATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1011125 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATA 24168 ||| || |||| | || || || |||||||||||| ||| | || || ||||| | Sbjct 1011124 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACAC-TCTCTGATTACA 1011066 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | || || || ||||| || ||||| | || || |||||||||| ||| Sbjct 1011065 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGCGGA 1011016 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || || || || || |||| ||| |||| || ||||| Sbjct 1011016 AATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010957 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| || || || | ||||| |||||| ||||||||||| || ||||| || || Sbjct 1010956 CGATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCA 1010897 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG-ACAGAAACGTCAGCGATTATA 24168 ||| ||||||| | || || || ||||||||||||| || | || || ||||| | Sbjct 1010896 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACAC-TCTCTGATTACA 1010838 Query 24169 ACATTCAAAAAGAATCTAC 24187 | || ||||||||||| || Sbjct 1010837 ATATACAAAAAGAATCCAC 1010819 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || ||||| || || |||| ||| |||| || ||||| | Sbjct 1011471 ATGCAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1011412 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | ||||| || ||| ||||||||||| || ||||| || ||| Sbjct 1011411 GATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAA 1011352 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATAA 24169 || || |||| | || || || |||||||||||| ||| | || || ||||| || Sbjct 1011351 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACAC-TCTCTGATTACAA 1011293 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || ||||| || ||||| | || || || ||||||| ||| Sbjct 1011292 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGA 1011244 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| || ||||| || | || || | ||||||||||| Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || ||| | ||||| || ||| |||||||| || |||||||| ||||| Sbjct 1010728 TGATACGATTGAGAATGTCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGATCA 1010669 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATA 24168 ||| || | || | | ||| ||||| || || ||| ||| | || || ||||| | Sbjct 1010668 ACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACAC-TCTCTGATTACA 1010610 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 | || || || ||||| || ||||| | || || |||||||||| ||| Sbjct 1010609 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGGA 1010560 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || ||||| || | || || ||| | || ||| | |||||||| || Sbjct 654954 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTC 654895 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | || ||| || || || || || || || ||||| ||||| Sbjct 654894 AGATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCA 654835 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || ||||||||||| || |||| ||| | ||||| || Sbjct 654834 GCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAA 654775 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||||| ||||||||||| ||||||| || | ||| | | |||||| Sbjct 654774 CATTCAGAAAGAATCTACTCTTCATTTGGTCCTGAGACTTCGTGGAGGA 654726 >seq21718 Length=958615 Score = 109 bits (120), Expect = 5e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| |||||||| |||| || ||||| | Sbjct 51270 ATGCAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCTTCC 51211 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| |||||| | || ||| ||||||| |||||||| || || || ||||||||| Sbjct 51210 GACACTATCGAGAATGTGAAAGCAAAGATTCAAGACAAAGAGGGAATCCCACCCGATCAA 51151 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | | || |||||| | || |||| | | | | |||||||||| Sbjct 51150 CAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTATAAC 51091 Query 24171 ATTCAAAAAG 24180 ||||| |||| Sbjct 51090 ATTCAGAAAG 51081 >seq36416 Length=241146 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24092 AGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG 24151 ||| || || ||||||||||| |||||||||| | |||||| ||| | || |||| || Sbjct 80529 AGGAATTCCACCCGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAG 80588 Query 24152 AAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAG 24211 || | |||||||||||| ||||| || || || | ||||| |||||| | ||||| Sbjct 80589 AACTCTGTCCGATTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAG 80648 Query 24212 AGGAGG 24217 ||| || Sbjct 80649 AGGCGG 80654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429671031518040