Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq36416 100 2e-16 seq16708 86.0 5e-12 >seq36416 Length=241146 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 115400 GATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGAT 115459 ||||| |||||||| |||| ||| ||||||||||| || |||| | ||| || ||||| Sbjct 80542 GATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAGAACTCTGTCCGAT 80601 Query 115460 TATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| ||||| ||||| || ||||| ||||||| | ||| |||| || Sbjct 80602 TATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAGAGGCGG 80654 >seq16708 Length=1145218 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| |||||||| || ||| | || || ||||| || ||| |||| ||| | Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| | | || || || || |||||| || |||||||| | || || | Sbjct 1010272 CGACAC-GATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACC 1010214 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 | ||| || | || | || || |||||| | ||||||| | ||| | ||||||||| Sbjct 1010213 AACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATA 1010154 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 |||| || |||||||| || | ||| |||| | || || |||| |||| Sbjct 1010153 ACATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425081861556160