Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 120 4e-22
seq48246 104 3e-17
seq2114 87.8 2e-12
>seq10733
Length=171697
Score = 120 bits (132), Expect = 4e-22
Identities = 143/194 (74%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 62179 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62238
||| |||||||| |||||||| ||||| ||||| ||||| | || |||||||| ||||
Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751
Query 62239 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62298
||| ||||| | ||| ||||||||||| | || || || || || || || ||||||||
Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811
Query 62299 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62358
|| | | ||| ||| |||| |||| | | ||| || ||||| | | | ||||
Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871
Query 62359 ATTCCAAAGATCCG 62372
|| ||| | |||||
Sbjct 125872 ATCCCATAAATCCG 125885
Score = 111 bits (122), Expect = 2e-19
Identities = 219/316 (69%), Gaps = 10/316 (3%)
Strand=Plus/Plus
Query 63137 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63196
|| || ||||||||||||||||| | ||| | | |||||| | |||||| ||||| ||
Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693
Query 63197 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63256
|| | || | |||| || | || |||||||| ||||| | |||| ||| || ||
Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753
Query 63257 TTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAG 63316
||||| |||| | ||| |||| | |||||| ||| |||| || | || ||| |
Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGC--TAGCTATTG 126811
Query 63317 --CTTCCACTGGCACGAATATTA-CTA-ATTGATAGACCTATTCCCCCTGCCATTTTAGA 63372
| || || || | ||| | || |||| || || || || || || ||||
Sbjct 126812 GTGTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACT 126869
Query 63373 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA-TGT 63431
|| | ||| |||| |||||| |||||||| || || | |||||||| || ||| |||
Sbjct 126870 AATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGT 126929
Query 63432 TAAGTAGAAAACAGCT 63447
||| |||||||| ||
Sbjct 126930 TAA-CAGAAAACAACT 126944
Score = 100 bits (110), Expect = 4e-16
Identities = 171/248 (69%), Gaps = 0/248 (0%)
Strand=Plus/Plus
Query 62730 TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCG 62789
|||||||||| || | |||| || |||| ||| || ||||| || |||| | | |
Sbjct 126077 TTACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAG 126136
Query 62790 CATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGAT 62849
|||||||| || || || || | |||||| || || || ||||||| |||||| ||||
Sbjct 126137 AATATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGAT 126196
Query 62850 TACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAG 62909
| || ||| || |||||||||||| || || ||||| || ||||||| || |
Sbjct 126197 TCGATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256
Query 62910 ATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTC 62969
| | || ||| |||| | | | | || | ||| ||||||||| || ||
Sbjct 126257 CAACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCTTTTCTCAT 126316
Query 62970 TTTCGTAT 62977
||||||||
Sbjct 126317 TTTCGTAT 126324
>seq48246
Length=3565318
Score = 104 bits (114), Expect = 3e-17
Identities = 99/127 (78%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204
||||||| | ||||||||||||||| ||||| || || || ||||| ||||||||||| |
Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567
Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 33264
||| |||||| | | ||||| ||||| | ||||||||| || || || | | || |
Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTTCTCTTTGAGTA 2532627
Query 33265 TTGGTTC 33271
||||||
Sbjct 2532628 ATGGTTC 2532634
>seq2114
Length=466
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 8/174 (5%)
Strand=Plus/Plus
Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485
||| |||| || ||||| | |||| || ||||||| ||||||||| || ||||| |||
Sbjct 261 CCTTCATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCA 320
Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545
| |||||| | ||||| || || | |||| || | ||| || || || ||||||
Sbjct 321 CTGTAATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAAT 380
Query 62546 GGATA----ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595
||||| ||| || |||| || ||||| | ||||||| ||||||||
Sbjct 381 GGATATCGCATTAAAAGGAAT----GCATCTGCCAGACCTTGAATTCCAATACC 430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633231481212800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |