Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq16708 125 6e-24 seq21718 113 4e-20 seq36416 93.3 4e-14 >seq16708 Length=1145218 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||| ||||| || ||| | || || |||| || ||| | || Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| |||||| | ||| | |||| ||| ||||||||||| ||||| || |||| Sbjct 1010272 CGACACGATCGAGAATGTCAAGGCCAAAATTCAG-GACAAAGAAGGAATTCCTCCGGACC 1010214 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || |||||| | ||||||| | || | |||||| | Sbjct 1010213 AACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATA 1010154 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || ||||| || || || ||| | || ||| | || ||||| |||| Sbjct 1010153 ACATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010103 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||||||||| || || | || || |||| || ||| | || Sbjct 1011244 AATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTC 1011185 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || ||| | ||| | |||| ||| ||||||||||| ||||| || |||| Sbjct 1011184 CGATACGATTGAGAACGTCAAGGCCAAAATTCAG-GACAAAGAAGGAATTCCTCCGGACC 1011126 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || |||||| | ||||||| ||||| | ||||||| Sbjct 1011125 AACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACA 1011066 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| || || |||||||| || ||| | || ||| | | ||||| |||| Sbjct 1011065 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGCGGAA 1011015 Score = 118 bits (130), Expect = 9e-22 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || | || || |||| || ||| | || Sbjct 1011016 AATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010957 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || || || |||| | || || | ||| ||||||||||| ||||| || | Sbjct 1010956 CGATACGATTGAAAACGTCA---AGGCCAAGATTCAA-GACAAAGAAGGAATTCCTCCGG 1010901 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 ||||||| || | || || || || |||||| | ||||||| ||||| | |||| Sbjct 1010900 ACCAACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATT 1010841 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||||| |||||||||||||| || ||| | || || | || |||| |||| Sbjct 1010840 ACAATATACAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGAGGTGGAA 1010787 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| ||||| || || | || || |||| || ||| | || Sbjct 1010560 AATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010501 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || |||||| | ||| | || | ||| |||||||| || || || || |||| Sbjct 1010500 CGATACGATCGAGAATGTCAAGGCCAAGATTCAG-GACAAAGAGGGAATACCTCCGGACC 1010442 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || || || || |||||| | ||||||| ||||| | ||||||| Sbjct 1010441 AACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCTCTGATTACA 1010382 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| || || |||||||| || ||| | || ||| | || ||||| |||| Sbjct 1010381 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010331 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| || || || || | || || |||| || ||| | || Sbjct 1011471 ATGCAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1011412 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | |||| ||| ||||||||||| ||||| || ||||| Sbjct 1011411 GATACGATTGAGAACGTCAAGGCCAAAATTCAG-GACAAAGAAGGAATTCCTCCGGACCA 1011353 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || || || || |||||| | ||||||| ||||| | |||||||| Sbjct 1011352 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1011293 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||| || || |||||||| || ||| | || ||| | || ||||| |||| Sbjct 1011292 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1011243 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| |||| || || | |||||| | ||||| ||| |||| Sbjct 1010104 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTC 1010045 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || ||||| |||| || |||| ||| ||||||||||| |||||||| |||| Sbjct 1010044 CGATACCATCGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATTCCACCGGACC 1009986 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || || || || || || |||||||||| ||||| | ||||| | Sbjct 1009985 AGCAAAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTATA 1009926 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || || || || || || || ||| | || || | || ||||||| Sbjct 1009925 ACATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTCCGAGGAGG 1009877 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || ||||| || || | |||||| | ||||| ||| | || Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || || ||| | ||| | |||| ||| |||||||| || || || || || | Sbjct 1010728 TGATACGATTGAGAATGTCAAGGCCAAAATTCAG-GACAAAGAGGGAATACCTCCGGATC 1010670 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || |||||||| || || | || |||| ||||| | ||||||| Sbjct 1010669 AACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACA 1010610 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||| || || |||||||| || ||| | || ||| | | ||||| |||| Sbjct 1010609 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGGAA 1010559 >seq21718 Length=958615 Score = 113 bits (124), Expect = 4e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| ||||| || || || |||| |||||| | || || |||| || ||| | Sbjct 51273 ACGATGCAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCT 51214 Query 25056 TCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || |||||||||||| || ||||||| | ||| |||||||| || || ||||| || Sbjct 51213 TCCGACACTATCGAGAATGTGAAAGCAAAGATTCA-AGACAAAGAGGGAATCCCACCCGA 51155 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | || ||||| || || ||||| || |||| ||||| | |||||| Sbjct 51154 TCAACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTA 51095 Query 25175 CAATATTCAAAAAG 25188 || ||||| |||| Sbjct 51094 TAACATTCAGAAAG 51081 >seq36416 Length=241146 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159 ||| |||||||| || ||||| | | |||||||||||||||||||| || |||| | Sbjct 80529 AGGAATTCCACCCGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAG 80588 Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219 ||| || |||||| || || ||||| || |||||| ||||||| ||| || | | || Sbjct 80589 AACTCTGTCCGATTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAG 80648 Query 25220 AGGAGG 25225 ||| || Sbjct 80649 AGGCGG 80654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433060941036920