Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 125 6e-24
seq21718 113 4e-20
seq36416 93.3 4e-14
>seq16708
Length=1145218
Score = 125 bits (138), Expect = 6e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||||||||| ||||| || ||| | || || |||| || ||| | ||
Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| |||||| | ||| | |||| ||| ||||||||||| ||||| || ||||
Sbjct 1010272 CGACACGATCGAGAATGTCAAGGCCAAAATTCAG-GACAAAGAAGGAATTCCTCCGGACC 1010214
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || || || || |||||| | ||||||| | || | |||||| |
Sbjct 1010213 AACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATA 1010154
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
| || || ||||| || || || ||| | || ||| | || ||||| ||||
Sbjct 1010153 ACATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010103
Score = 125 bits (138), Expect = 6e-24
Identities = 168/231 (73%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||||||||| || || | || || |||| || ||| | ||
Sbjct 1011244 AATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTC 1011185
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || || ||| | ||| | |||| ||| ||||||||||| ||||| || ||||
Sbjct 1011184 CGATACGATTGAGAACGTCAAGGCCAAAATTCAG-GACAAAGAAGGAATTCCTCCGGACC 1011126
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || || || || |||||| | ||||||| ||||| | |||||||
Sbjct 1011125 AACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACA 1011066
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|||| || || |||||||| || ||| | || ||| | | ||||| ||||
Sbjct 1011065 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGCGGAA 1011015
Score = 118 bits (130), Expect = 9e-22
Identities = 168/234 (72%), Gaps = 8/234 (3%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| ||||| || || | || || |||| || ||| | ||
Sbjct 1011016 AATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010957
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|| || || || |||| | || || | ||| ||||||||||| ||||| || |
Sbjct 1010956 CGATACGATTGAAAACGTCA---AGGCCAAGATTCAA-GACAAAGAAGGAATTCCTCCGG 1010901
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
||||||| || | || || || || |||||| | ||||||| ||||| | ||||
Sbjct 1010900 ACCAACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATT 1010841
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
||||||| |||||||||||||| || ||| | || || | || |||| ||||
Sbjct 1010840 ACAATATACAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGAGGTGGAA 1010787
Score = 116 bits (128), Expect = 3e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| ||||| ||||| || || | || || |||| || ||| | ||
Sbjct 1010560 AATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010501
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || |||||| | ||| | || | ||| |||||||| || || || || ||||
Sbjct 1010500 CGATACGATCGAGAATGTCAAGGCCAAGATTCAG-GACAAAGAGGGAATACCTCCGGACC 1010442
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || || || || |||||| | ||||||| ||||| | |||||||
Sbjct 1010441 AACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCTCTGATTACA 1010382
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|||| || || |||||||| || ||| | || ||| | || ||||| ||||
Sbjct 1010381 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010331
Score = 114 bits (126), Expect = 1e-20
Identities = 165/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| || || || || | || || |||| || ||| | ||
Sbjct 1011471 ATGCAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1011412
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || || ||| | ||| | |||| ||| ||||||||||| ||||| || |||||
Sbjct 1011411 GATACGATTGAGAACGTCAAGGCCAAAATTCAG-GACAAAGAAGGAATTCCTCCGGACCA 1011353
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | || || || || |||||| | ||||||| ||||| | ||||||||
Sbjct 1011352 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1011293
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
||| || || |||||||| || ||| | || ||| | || ||||| ||||
Sbjct 1011292 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1011243
Score = 113 bits (124), Expect = 4e-20
Identities = 164/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| |||||| |||| || || | |||||| | ||||| ||| ||||
Sbjct 1010104 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTC 1010045
Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|| || ||||| |||| || |||| ||| ||||||||||| |||||||| ||||
Sbjct 1010044 CGATACCATCGAAAATGTGAAAGCTAAAATTCAA-GACAAAGAAGGAATTCCACCGGACC 1009986
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| || | | || || || || || || |||||||||| ||||| | ||||| |
Sbjct 1009985 AGCAAAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTATA 1009926
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || || || || || || || ||| | || || | || |||||||
Sbjct 1009925 ACATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTCCGAGGAGG 1009877
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| || || ||||| || || | |||||| | ||||| ||| | ||
Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729
Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||| || || ||| | ||| | |||| ||| |||||||| || || || || || |
Sbjct 1010728 TGATACGATTGAGAATGTCAAGGCCAAAATTCAG-GACAAAGAGGGAATACCTCCGGATC 1010670
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| || | || |||||||| || || | || |||| ||||| | |||||||
Sbjct 1010669 AACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACA 1010610
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|||| || || |||||||| || ||| | || ||| | | ||||| ||||
Sbjct 1010609 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGGAA 1010559
>seq21718
Length=958615
Score = 113 bits (124), Expect = 4e-20
Identities = 143/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055
|| ||||| ||||| || || || |||| |||||| | || || |||| || ||| |
Sbjct 51273 ACGATGCAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCT 51214
Query 25056 TCTGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| |||||||||||| || ||||||| | ||| |||||||| || || ||||| ||
Sbjct 51213 TCCGACACTATCGAGAATGTGAAAGCAAAGATTCA-AGACAAAGAGGGAATCCCACCCGA 51155
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|||||||| | || ||||| || || ||||| || |||| ||||| | ||||||
Sbjct 51154 TCAACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTA 51095
Query 25175 CAATATTCAAAAAG 25188
|| ||||| ||||
Sbjct 51094 TAACATTCAGAAAG 51081
>seq36416
Length=241146
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||| |||||||| || ||||| | | |||||||||||||||||||| || |||| |
Sbjct 80529 AGGAATTCCACCCGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAG 80588
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAG 25219
||| || |||||| || || ||||| || |||||| ||||||| ||| || | | ||
Sbjct 80589 AACTCTGTCCGATTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAG 80648
Query 25220 AGGAGG 25225
||| ||
Sbjct 80649 AGGCGG 80654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433060941036920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |