Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq48246 136 4e-27 seq48265 122 1e-22 seq40380 109 6e-19 >seq48246 Length=3565318 Score = 136 bits (150), Expect = 4e-27 Identities = 141/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 |||||||| || ||||| | || |||||||| || || || |||||||| || | ||| Sbjct 2532214 ATGTATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGA 2532273 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || |||||||| | || || || | || |||||||| ||||| ||||||||| Sbjct 2532274 AAGCCATAGAAACAGCGTGCCTCTGTCACTTGAACTTCTTGGCTAAATCGTTCTACGAGA 2532333 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 || ||||| || ||||| |||||||| || || || || |||| ||| |||||| ||| Sbjct 2532334 TTCTCATTAACGATACCGTCGGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGTGT 2532393 Query 93542 TTCTC 93546 ||||| Sbjct 2532394 TTCTC 2532398 Score = 116 bits (128), Expect = 4e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638 |||| || ||||| |||||||| |||||||| || || |||||||||||||| ||||| | Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698 ||| ||||| | | ||||| ||||||| ||||| | |||||||| ||||| |||| Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTTCTCTTTGAGTA 2532627 Query 93699 ACGGCTCTAGTT 93710 | || |||| || Sbjct 2532628 ATGGTTCTAATT 2532639 >seq48265 Length=634 Score = 122 bits (134), Expect = 1e-22 Identities = 85/96 (89%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||| ||||| |||||||||| | |||||| Sbjct 216 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATAGGGAGC 157 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358 |||||||||||||||||||||| ||||| || ||| Sbjct 156 GTGGGTTCGAACCCCACACCTGGCAAATACTTTTTG 121 >seq40380 Length=1169529 Score = 109 bits (120), Expect = 6e-19 Identities = 85/100 (85%), Gaps = 5/100 (5%) Strand=Plus/Minus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| Sbjct 672139 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTATGGGAGCGTGG 672080 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||||||||| | |||| | || || |||||| Sbjct 672079 GTTCGAACCCCACACTTAGCAAAATCTTTTT---ATTTTT 672043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556508808288320