Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq48246 136 4e-27
seq48265 122 1e-22
seq40380 109 6e-19
>seq48246
Length=3565318
Score = 136 bits (150), Expect = 4e-27
Identities = 141/185 (76%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421
|||||||| || ||||| | || |||||||| || || || |||||||| || | |||
Sbjct 2532214 ATGTATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGA 2532273
Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481
|| || |||||||| | || || || | || |||||||| ||||| |||||||||
Sbjct 2532274 AAGCCATAGAAACAGCGTGCCTCTGTCACTTGAACTTCTTGGCTAAATCGTTCTACGAGA 2532333
Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541
|| ||||| || ||||| |||||||| || || || || |||| ||| |||||| |||
Sbjct 2532334 TTCTCATTAACGATACCGTCGGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGTGT 2532393
Query 93542 TTCTC 93546
|||||
Sbjct 2532394 TTCTC 2532398
Score = 116 bits (128), Expect = 4e-21
Identities = 105/132 (80%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 93579 CTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATAT 93638
|||| || ||||| |||||||| |||||||| || || |||||||||||||| ||||| |
Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567
Query 93639 CCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTA 93698
||| ||||| | | ||||| ||||||| ||||| | |||||||| ||||| ||||
Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTTCTCTTTGAGTA 2532627
Query 93699 ACGGCTCTAGTT 93710
| || |||| ||
Sbjct 2532628 ATGGTTCTAATT 2532639
>seq48265
Length=634
Score = 122 bits (134), Expect = 1e-22
Identities = 85/96 (89%), Gaps = 2/96 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
|| ||||||||||||| |||||||||||||||| ||||| |||||||||| | ||||||
Sbjct 216 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGACTTAAGTTCTGGTTCCCGATAGGGAGC 157
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTG 126358
|||||||||||||||||||||| ||||| || |||
Sbjct 156 GTGGGTTCGAACCCCACACCTGGCAAATACTTTTTG 121
>seq40380
Length=1169529
Score = 109 bits (120), Expect = 6e-19
Identities = 85/100 (85%), Gaps = 5/100 (5%)
Strand=Plus/Minus
Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326
|||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 672139 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGTATGGGAGCGTGG 672080
Query 126327 GTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
||||||||||||||| | |||| | || || ||||||
Sbjct 672079 GTTCGAACCCCACACTTAGCAAAATCTTTTT---ATTTTT 672043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556508808288320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |