Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq30256 95.1 2e-14 seq13344 89.7 1e-12 seq36416 86.0 1e-11 seq48342 84.2 4e-11 seq42576 84.2 4e-11 >seq30256 Length=950850 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 470460 GCCCGATTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 470401 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 470400 CCCACATTGGGC 470389 >seq13344 Length=139626 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142050 CATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCG 142109 || ||| || ||||||| ||| ||||||||||||||||||||||||||| ||||||||| Sbjct 92894 CAAGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCG 92835 Query 142110 ACCCCCGCCAGAGA 142123 | |||||| || || Sbjct 92834 ATCCCCGCAAGGGA 92821 >seq36416 Length=241146 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||| Sbjct 189950 GCCCGGCTAGCTCAGACGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 189891 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 189890 CCCACGTTGGGC 189879 >seq48342 Length=20877 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1544 TAGCCTGACTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1485 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 1484 GCCCCACGTTGGGC 1471 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 4466 TAGCCTGACTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 4407 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 4406 GCCCCACGTTGGGC 4393 >seq42576 Length=39040 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||| | |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 28733 TAGCCTGACTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 28792 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 28793 GCCCCACGTTGGGC 28806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027170861967688