Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq16708 181 2e-40 seq21718 145 1e-29 seq36416 127 4e-24 seq901 104 4e-17 >seq16708 Length=1145218 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| | || |||| || ||||||||||| ||||||||||| ||||| || Sbjct 653815 CCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 653874 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| ||||||||||| || ||||| || | | || || || || ||| Sbjct 653875 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 653934 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || || || || || || |||||| ||||| | | ||| ||| Sbjct 653935 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACT 653994 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||||||||||||| || ||||| ||||| ||||| ||||||||| Sbjct 653995 TCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | || |||| || ||||||||||| ||||||||||| ||||| | Sbjct 654497 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 654556 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | ||||| ||||||||||| || ||||| || | | || || || || | Sbjct 654557 ATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654616 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || |||||||| || || || || || || |||||| ||||| | | ||| | Sbjct 654617 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGA 654676 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| |||||||||||| || ||||| ||||| ||||| ||||||||| Sbjct 654677 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654726 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | || |||| || ||||||||||| ||||||||||| ||||| | Sbjct 654953 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 655012 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | ||||| |||| ||||| || ||||| || | | || || || || | Sbjct 655013 AGAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 655072 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| |||||||| || || || || || || ||| ||||| ||||||| | ||| | Sbjct 655073 GAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGA 655132 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| |||||||||||| || ||||| |||||||| || |||||||| Sbjct 655133 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 655181 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | || || || ||||| || |||||||||||||| || Sbjct 1009877 CCTCCTCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAA 1009936 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | ||||||||||||||||| || ||||| || | |||||| ||||| |||||| Sbjct 1009937 AGTGTGCGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGA 1009996 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||||||||| || || || || |||||||| || | | || ||| Sbjct 1009997 ATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGACT 1010056 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| ||||| || || || || || ||||| || || ||||||||| Sbjct 1010057 TCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCATT 1010104 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || |||||||| | ||| | || || ||||| |||||||| || || ||||| | Sbjct 1010787 TTCCACCTCGAAGGCGGAGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAG 1010846 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 ||||||| | |||||||| | || || || ||||| || |||| ||||||||| || | Sbjct 1010847 AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAG 1010906 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| |||||||||||||| ||||||||| || || || || | | || | Sbjct 1010907 GAATTCCTTCTTTGTCTTGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAA 1010966 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 | || | ||| || || || || || | |||||||| || ||||||||| Sbjct 1010967 CCTCGAGGGTTATCGTCTTGCCTGTCAACGTCTTGACAAAAATCTGCATT 1011016 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || || |||||||| ||||||||||||||||| || || || |||||||| Sbjct 1010123 ACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTTCCATCTTCG 1010182 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || ||||| || | || ||||||||| || ||||| ||||| ||||| ||| Sbjct 1010183 AGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGA 1010242 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || |||||||| |||||| ||||| | | || || || | ||| || ||||| Sbjct 1010243 ATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTTATCGTTTTG 1010302 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | ||||| || || ||||||||| Sbjct 1010303 CCTGTCAACGTCTTTACAAAAATCTGCATT 1010332 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| ||||| | || ||||| || || || ||||| || || ||||| || || | Sbjct 654041 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCG 654100 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | | || | ||||| || | |||||| || ||||| || | | || || || || | Sbjct 654101 ACAAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAG 654160 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || |||||||| || || || || || || |||||| ||||| | | ||| | Sbjct 654161 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGA 654220 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| |||||||||||| || ||||| ||||| ||||| ||||||||| Sbjct 654221 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654270 Score = 136 bits (150), Expect = 7e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || ||||| || || || || || ||||| |||||||| | |||||||| Sbjct 1011263 ACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCTTCG 1011322 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || || ||||| || | || ||||||||| || ||||| ||||| ||||| ||| Sbjct 1011323 AGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGA 1011382 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 || || ||||||||| ||| || || || | | || || || | ||| || || || Sbjct 1011383 ATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTG 1011442 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467 || || | ||||||||||| |||||||| || || Sbjct 1011443 CCTGTTAACGTCTTGACGAAGATCTGCATGATTCT 1011477 >seq21718 Length=958615 Score = 145 bits (160), Expect = 1e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 |||| || |||||||||||||| || || | ||||| || || ||||| || || || | Sbjct 51081 CTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGA 51140 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | | ||||| |||||||| || || || ||||||||||||||||| || || || Sbjct 51141 TCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCT 51200 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||| ||||| | | ||||| || | ||| || ||||| ||||| ||||| || |||| Sbjct 51201 CGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGA 51260 Query 68452 ATATCTGCAT 68461 |||||||||| Sbjct 51261 ATATCTGCAT 51270 >seq36416 Length=241146 Score = 127 bits (140), Expect = 4e-24 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305 ||| || ||||| |||| ||||||||| |||||||||||||||||||| || || ||||| Sbjct 80643 GCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGGACAGAGTTCTCCC 80584 Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360 ||| || || || || ||||| || || ||||||||||| ||||||||||| ||| Sbjct 80583 ATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGGGTGGAATTCCT 80529 >seq901 Length=499 Score = 104 bits (114), Expect = 4e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399 || || || || ||||| |||||||| || || || || || || ||| ||||| ||| Sbjct 9 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTG 68 Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459 |||| | ||| ||||||| |||||||||||| || ||||| |||||||| || |||||| Sbjct 69 TCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGC 128 Query 68460 AT 68461 || Sbjct 129 AT 130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921039842480960