Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 181 2e-40
seq21718 145 1e-29
seq36416 127 4e-24
seq901 104 4e-17
>seq16708
Length=1145218
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| ||||| | || |||| || ||||||||||| ||||||||||| ||||| ||
Sbjct 653815 CCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 653874
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| ||||||||||| || ||||| || | | || || || || |||
Sbjct 653875 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 653934
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || || || || || || |||||| ||||| | | ||| |||
Sbjct 653935 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACT 653994
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||||||||||||||| || ||||| ||||| ||||| |||||||||
Sbjct 653995 TCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042
Score = 181 bits (200), Expect = 2e-40
Identities = 178/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
||||||| ||||| | || |||| || ||||||||||| ||||||||||| ||||| |
Sbjct 654497 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 654556
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| || || | ||||| ||||||||||| || ||||| || | | || || || || |
Sbjct 654557 ATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654616
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| || |||||||| || || || || || || |||||| ||||| | | ||| |
Sbjct 654617 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGA 654676
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||||| |||||||||||| || ||||| ||||| ||||| |||||||||
Sbjct 654677 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654726
Score = 179 bits (198), Expect = 7e-40
Identities = 177/229 (77%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
||||||| ||||| | || |||| || ||||||||||| ||||||||||| ||||| |
Sbjct 654953 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 655012
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
|||| || | ||||| |||| ||||| || ||||| || | | || || || || |
Sbjct 655013 AGAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 655072
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| |||||||| || || || || || || ||| ||||| ||||||| | ||| |
Sbjct 655073 GAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGA 655132
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||| |||||||||||| || ||||| |||||||| || ||||||||
Sbjct 655133 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 655181
Score = 172 bits (190), Expect = 1e-37
Identities = 175/228 (77%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | || || || ||||| || |||||||||||||| ||
Sbjct 1009877 CCTCCTCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAA 1009936
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | ||||||||||||||||| || ||||| || | |||||| ||||| ||||||
Sbjct 1009937 AGTGTGCGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGA 1009996
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| ||||||||||| || || || || |||||||| || | | || |||
Sbjct 1009997 ATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGACT 1010056
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
||||| ||||| || || || || || ||||| || || |||||||||
Sbjct 1010057 TCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCATT 1010104
Score = 163 bits (180), Expect = 5e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| || |||||||| | ||| | || || ||||| |||||||| || || ||||| |
Sbjct 1010787 TTCCACCTCGAAGGCGGAGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAG 1010846
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
||||||| | |||||||| | || || || ||||| || |||| ||||||||| || |
Sbjct 1010847 AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAG 1010906
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| ||||| |||||||||||||| ||||||||| || || || || | | || |
Sbjct 1010907 GAATTCCTTCTTTGTCTTGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAA 1010966
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
| || | ||| || || || || || | |||||||| || |||||||||
Sbjct 1010967 CCTCGAGGGTTATCGTCTTGCCTGTCAACGTCTTGACAAAAATCTGCATT 1011016
Score = 154 bits (170), Expect = 3e-32
Identities = 160/210 (76%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| || || || |||||||| ||||||||||||||||| || || || ||||||||
Sbjct 1010123 ACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTTCCATCTTCG 1010182
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| || || || ||||| || | || ||||||||| || ||||| ||||| ||||| |||
Sbjct 1010183 AGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGA 1010242
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || |||||||| |||||| ||||| | | || || || | ||| || |||||
Sbjct 1010243 ATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTTATCGTTTTG 1010302
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|| || | ||||| || || |||||||||
Sbjct 1010303 CCTGTCAACGTCTTTACAAAAATCTGCATT 1010332
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
||||||| ||||| | || ||||| || || || ||||| || || ||||| || || |
Sbjct 654041 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCG 654100
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
| | || | ||||| || | |||||| || ||||| || | | || || || || |
Sbjct 654101 ACAAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAG 654160
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
|||| || |||||||| || || || || || || |||||| ||||| | | ||| |
Sbjct 654161 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGA 654220
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||||| |||||||||||| || ||||| ||||| ||||| |||||||||
Sbjct 654221 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654270
Score = 136 bits (150), Expect = 7e-27
Identities = 159/215 (74%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| || || ||||| || || || || || ||||| |||||||| | ||||||||
Sbjct 1011263 ACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCTTCG 1011322
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| || || || ||||| || | || ||||||||| || ||||| ||||| ||||| |||
Sbjct 1011323 AGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTGA 1011382
Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432
|| || ||||||||| ||| || || || | | || || || | ||| || || ||
Sbjct 1011383 ATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTG 1011442
Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCATTATGCT 68467
|| || | ||||||||||| |||||||| || ||
Sbjct 1011443 CCTGTTAACGTCTTGACGAAGATCTGCATGATTCT 1011477
>seq21718
Length=958615
Score = 145 bits (160), Expect = 1e-29
Identities = 146/190 (77%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331
|||| || |||||||||||||| || || | ||||| || || ||||| || || || |
Sbjct 51081 CTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGA 51140
Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391
| | | ||||| |||||||| || || || ||||||||||||||||| || || ||
Sbjct 51141 TCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCT 51200
Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451
|||| ||||| | | ||||| || | ||| || ||||| ||||| ||||| || ||||
Sbjct 51201 CGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGA 51260
Query 68452 ATATCTGCAT 68461
||||||||||
Sbjct 51261 ATATCTGCAT 51270
>seq36416
Length=241146
Score = 127 bits (140), Expect = 4e-24
Identities = 97/115 (84%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 68246 GCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCC 68305
||| || ||||| |||| ||||||||| |||||||||||||||||||| || || |||||
Sbjct 80643 GCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGGACAGAGTTCTCCC 80584
Query 68306 ATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCT 68360
||| || || || || ||||| || || ||||||||||| ||||||||||| |||
Sbjct 80583 ATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGGGTGGAATTCCT 80529
>seq901
Length=499
Score = 104 bits (114), Expect = 4e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 68340 TGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTG 68399
|| || || || ||||| |||||||| || || || || || || ||| ||||| |||
Sbjct 9 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTG 68
Query 68400 TCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGC 68459
|||| | ||| ||||||| |||||||||||| || ||||| |||||||| || ||||||
Sbjct 69 TCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGC 128
Query 68460 AT 68461
||
Sbjct 129 AT 130
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921039842480960
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