Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq16708 102 6e-17 >seq16708 Length=1145218 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || ||||| || ||||| || || ||| | || || || | Sbjct 1010560 AATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010501 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | || | ||| || ||| || |||||||| ||||| |||| Sbjct 1010500 CGATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGAATACCTCCGGACCA 1010441 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| |||| ||||| ||||| |||||||| |||||| || | | |||||||| Sbjct 1010440 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCTCTGATTACAA 1010381 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| ||||||||||| ||||||||| |||| |||| | |||| ||| Sbjct 1010380 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGA 1010332 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | ||||| || || || || || || || ||||| || || | Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | || | ||| |||||| || |||||||| ||||| | || Sbjct 1010728 TGATACGATTGAGAATGTCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGATCA 1010669 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| || | |||||||| || || || || || ||| | || | | |||||||| Sbjct 1010668 ACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACAA 1010609 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||| ||||||||||| ||||||||| |||| |||| || |||| ||| Sbjct 1010608 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGGA 1010560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | || || | || || ||||| || ||| ||||| ||||| | Sbjct 654498 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTC 654439 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | | || ||||| ||||| ||||| | ||| | || Sbjct 654438 AGATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCA 654379 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||| |||||||| |||||||| ||| | |||| | | |||||||| Sbjct 654378 GCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAA 654319 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| |||||||||||| |||| Sbjct 654318 CATTCAGAAGGAGTCTACTCTTCATTTGGT 654289 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | || || | || || ||||| || ||| ||||| ||||| | Sbjct 654954 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTC 654895 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| ||| | | | | || ||||| ||||| ||||| | ||| | || Sbjct 654894 AGATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCA 654835 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||| |||||||| |||||||| ||| | |||| | | |||||||| Sbjct 654834 GCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAA 654775 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||| ||||||||||||||| |||| Sbjct 654774 CATTCAGAAAGAATCTACTCTTCATTTGGT 654745 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 21918 AAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAA 21977 |||||| || ||||| || | ||| ||||||| || | ||||| ||||| ||| Sbjct 1011159 AAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAACAACGATTGATCTTCGCTGGAAAA 1011100 Query 21978 CAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAT 22037 ||||| |||||| | || | | ||||||||||| ||||||||||| ||||||||| Sbjct 1011099 CAACTCGAAGATGGACGCACACTCTCTGATTACAATATACAGAAGGAATCCACTCTTCAT 1011040 Query 22038 ATGGTATTACGTTTACGAGGAGGA 22061 |||| |||| || |||| ||| Sbjct 1011039 CTGGTTCTACGATTGAGAGGCGGA 1011016 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || ||||| ||||| || || ||| | || || || | Sbjct 1011471 ATGCAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1011412 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | | | ||| |||||| || ||||| || | ||| ||||| Sbjct 1011411 GATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAA 1011352 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | ||||| ||||| |||||||| |||||| | || | | ||||||||| Sbjct 1011351 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAAT 1011292 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||||||||| ||||||||| |||| |||| | |||| ||| Sbjct 1011291 ATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGA 1011244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357904088581072