Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq48353 91.5 4e-15 seq6639 89.7 1e-14 >seq48353 Length=387532 Score = 91.5 bits (100), Expect = 4e-15 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3366 ATGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCAT 3425 ||||||||| ||||||| |||| |||| || | | |||| | ||| | |||||| | Sbjct 235482 ATGTACTTTCCACAAATTCGGTGCTTCTGGGACTATTCAAAAGTTCGATGCTCTCTGCGT 235541 Query 3426 CCTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTC 3480 || | |||| | ||||||||||||||||||||||||| |||||||||||| Sbjct 235542 TCTTGCCCTGAACATTCTCAACGAGAAGATCTACATTTTCCTTTGGTTCTGGTTC 235596 >seq6639 Length=878456 Score = 89.7 bits (98), Expect = 1e-14 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 3332 ACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTT 3391 |||| ||| ||| || || |||| |||| ||| || || |||||||| ||| | | Sbjct 785295 ACCCTATGTCGCGGGTGTTCCCAAAGGTCACCAAATGCACCTTCCACAAATATGGTGCAT 785354 Query 3392 CGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGA 3451 | || | || | || | ||| || |||||| | || ||| |||| | ||||| |||| Sbjct 785355 CCGGTACGGTGCAGAAATTCGACGGTCTCTGCGTGCTGCCGTTGAACATCGTCAATGAGA 785414 Query 3452 AGATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||||| | || ||||||||||||||| Sbjct 785415 AGATCTACGTGTTTCTCTGGTTCTGGTTC 785443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12473097468000