Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq15086 96.9 3e-15
seq16708 91.5 1e-13
seq42468 82.4 6e-11
>seq15086
Length=10902
Score = 96.9 bits (106), Expect = 3e-15
Identities = 83/99 (84%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACT--GAGTAAGATCTAAGGAA 115586
|||||||| |||||||||||||||| ||||||||||||| | | ||| ||||||| ||
Sbjct 1152 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATATGGGTACAATCTAAGAAA 1093
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 115625
||| ||||||| || ||||||||||| ||| || ||||
Sbjct 1092 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA 1054
Score = 96.9 bits (106), Expect = 3e-15
Identities = 83/99 (84%), Gaps = 4/99 (4%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACT--GAGTAAGATCTAAGGAA 114389
|||||||| |||||||||||||||| ||||||||||||| | | ||| ||||||| ||
Sbjct 1152 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATATGGGTACAATCTAAGAAA 1093
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 114428
||| ||||||| || ||||||||||| ||| || ||||
Sbjct 1092 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA 1054
>seq16708
Length=1145218
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| ||||||| || || ||||||||||| ||| |||||||| || |||||||| |
Sbjct 1010561 CCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010620
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| | || | || |||| ||||| |||||||| || | || || |||||| ||
Sbjct 1010621 AGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGT 1010680
Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079
| | |||||||||| |||||| ||| | |||| | |||||| || |||
Sbjct 1010681 ATTCCCTCTTTGTCCTGAATTTTGGCCTTGA-CATTCTCAATCGTATCAGAAGCCTCGAC 1010739
Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128
||| | || || || || || || | ||||||||||| || ||||||
Sbjct 1010740 TTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCATT 1010788
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||||| || | ||| ||||||||||||||| |||||| || ||||||||||| |
Sbjct 653814 ACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 653873
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| ||| | || || || |||||||| || || |||| |||||||||||
Sbjct 653874 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATC 653927
>seq42468
Length=17674
Score = 82.4 bits (90), Expect = 6e-11
Identities = 76/93 (82%), Gaps = 4/93 (4%)
Strand=Plus/Minus
Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGAA 115586
|||||||| |||||||||||||||| ||||||||||||| || ||| ||||||| ||
Sbjct 8274 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAAGAAA 8215
Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATC 115619
||| ||| || || |||||||||| ||| ||
Sbjct 8214 CCATAACCTATTTAATGAGCCATTCACGGTTTC 8182
Score = 82.4 bits (90), Expect = 6e-11
Identities = 76/93 (82%), Gaps = 4/93 (4%)
Strand=Plus/Minus
Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGAA 114389
|||||||| |||||||||||||||| ||||||||||||| || ||| ||||||| ||
Sbjct 8274 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAAGAAA 8215
Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATC 114422
||| ||| || || |||||||||| ||| ||
Sbjct 8214 CCATAACCTATTTAATGAGCCATTCACGGTTTC 8182
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396817691435536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |