Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq15086 96.9 3e-15 seq16708 91.5 1e-13 seq42468 82.4 6e-11 >seq15086 Length=10902 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACT--GAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| | | ||| ||||||| || Sbjct 1152 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATATGGGTACAATCTAAGAAA 1093 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 115625 ||| ||||||| || ||||||||||| ||| || |||| Sbjct 1092 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA 1054 Score = 96.9 bits (106), Expect = 3e-15 Identities = 83/99 (84%), Gaps = 4/99 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACT--GAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| | | ||| ||||||| || Sbjct 1152 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATATGGGTACAATCTAAGAAA 1093 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTA 114428 ||| ||||||| || ||||||||||| ||| || |||| Sbjct 1092 CCATAACTGATTTAATGAGCCATTCGCGGTTTCACCTTA 1054 >seq16708 Length=1145218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| || || ||||||||||| ||| |||||||| || |||||||| | Sbjct 1010561 CCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010620 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | | || | || |||| ||||| |||||||| || | || || |||||| || Sbjct 1010621 AGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGT 1010680 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC-TATCAGTAGATTCGCA 34079 | | |||||||||| |||||| ||| | |||| | |||||| || ||| Sbjct 1010681 ATTCCCTCTTTGTCCTGAATTTTGGCCTTGA-CATTCTCAATCGTATCAGAAGCCTCGAC 1010739 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || || || || | ||||||||||| || |||||| Sbjct 1010740 TTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCATT 1010788 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || | ||| ||||||||||||||| |||||| || ||||||||||| | Sbjct 653814 ACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 653873 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || || || |||||||| || || |||| ||||||||||| Sbjct 653874 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATC 653927 >seq42468 Length=17674 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/93 (82%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || ||| ||||||| || Sbjct 8274 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAAGAAA 8215 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATC 115619 ||| ||| || || |||||||||| ||| || Sbjct 8214 CCATAACCTATTTAATGAGCCATTCACGGTTTC 8182 Score = 82.4 bits (90), Expect = 6e-11 Identities = 76/93 (82%), Gaps = 4/93 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAA--CTGAGTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || ||| ||||||| || Sbjct 8274 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAAATGTGGGTACAATCTAAGAAA 8215 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATC 114422 ||| ||| || || |||||||||| ||| || Sbjct 8214 CCATAACCTATTTAATGAGCCATTCACGGTTTC 8182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396817691435536