Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_010106.1 Length=52975 Score E Sequences producing significant alignments: (Bits) Value seq11667 150 6e-32 >seq11667 Length=326 Score = 150 bits (166), Expect = 6e-32 Identities = 211/295 (72%), Gaps = 6/295 (2%) Strand=Plus/Plus Query 51957 ACGGCATATTCGAGAAGTTAATTGAGAAACAATTGTCATTCTTCTGGCGACCGGAAGAGG 52016 ||| |||||| || ||| | ||||||||||||||||| || |||||||| |||||||||| Sbjct 1 ACGACATATTTGAAAAGCTGATTGAGAAACAATTGTCGTTTTTCTGGCGTCCGGAAGAGG 60 Query 52017 TAGACGTTTCCCAGGACCGTATTGATTATCAGAAGCTACCTGCAAACGAACAACACATTT 52076 |||| || || | || || || ||||||||| ||| || | ||||| |||| || | Sbjct 61 TAGATGTGTCTCGCGATCGCATCGATTATCAGGCGCTGCCGGAGCACGAAAAACATATCT 120 Query 52077 TCACCAGTAATCTTCGTTATCAGATTCTTCTTGACTCAATTCAGGGACGTGGGCCCAA-- 52134 | | ||||| || ||||||| || || || ||||| ||||| || | ||||| Sbjct 121 TTATTAGTAACCTCAAATATCAGACGCTGCTGGATTCAATCCAGGGCCGCAGCCCCAATG 180 Query 52135 -CACAGTTTTGCTTCCAATCGTGAGCATTCCTGAATTGGAGACGTGGATTGAAACCTGGT 52193 | | |||| || || | || || || | || || ||| | ||||||||| Sbjct 181 TTGCGCTATTGCCTCTGATTTCG---ATACCGGAGCTAGAAACCTGGGTGGAAACCTGGG 237 Query 52194 CTTTCTCCGAGACTATTCATTCACGTTCTTATACCCACATCATTCGTAATATTGT 52248 | || || || || || ||||| || || |||||||| ||||| || ||||| || Sbjct 238 CGTTTTCTGAAACCATACATTCGCGCTCCTATACCCATATCATCCGCAATATCGT 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169296677107792