Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq16708 120 3e-22 seq12201 96.9 4e-15 seq19759 93.3 5e-14 seq32564 91.5 2e-13 seq17254 91.5 2e-13 seq38424 89.7 6e-13 >seq16708 Length=1145218 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | | || |||| ||| | ||| ||||||||| || |||||||||| Sbjct 653814 ACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 653873 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || |||| |||||| |||||||| || | |||||||| || | || Sbjct 653874 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 653933 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | |||||||||| |||||| ||| | || | | |||||| | ||| || Sbjct 653934 AATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 653993 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||||||||| || || || |||||||| || || |||||| Sbjct 653994 TTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042 Score = 118 bits (130), Expect = 1e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | ||| ||||||||| || |||||||||| ||||| || | || ||| Sbjct 654517 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654576 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | |||||| |||||||| || | |||||||| || | || | | |||||||||| | Sbjct 654577 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654636 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| ||| | || | | |||||| | ||| || || | ||||||||||| Sbjct 654637 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654696 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || |||||||| || || |||||| Sbjct 654697 CCTGTGAGAGTCTTTACGAAAATCTGCATT 654726 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||| | || |||||| ||||| ||||| || | || ||| || | || || Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| |||||||| || | |||||||| || | || | | |||||||||| | Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| ||| | || | | |||||| | ||| || || | ||||||||||| Sbjct 654181 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654240 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || |||||||| || || |||||| Sbjct 654241 CCTGTGAGAGTCTTTACGAAAATCTGCATT 654270 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||| | ||| ||||||||| || |||||||||| ||||| || | || ||| Sbjct 654973 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAGAGAGTACGTCCATCCTCT 655032 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| |||||||| || | |||||||| || | || | | ||||| ||| | Sbjct 655033 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 655092 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| ||| | | | | |||||| | ||| || || | ||||||||||| Sbjct 655093 ATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTTTTC 655152 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| |||||||| ||||| Sbjct 655153 CCTGTGAGAGTCTTGACAAAGATCTGCAT 655181 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | || | |||| ||| | ||| ||||| || ||||||||||||| Sbjct 1010333 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010392 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| | || || || || || |||||||| || ||||| || ||||| | || Sbjct 1010393 AGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGT 1010452 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| |||||| ||| | || | |||| || | | ||| ||| | || || Sbjct 1010453 ATTCCCTCTTTGTCC-TGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAAC 1010511 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || || || ||||| || | ||||| ||||| || |||||| Sbjct 1010512 CTCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCATT 1010560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| | || | |||| ||| | ||| ||||| || ||||||||||||| Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || || || || |||||||| || | ||| || ||||| | || Sbjct 1011305 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011364 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || |||||| ||| |||| | |||| || | | ||| ||| | || || Sbjct 1011365 ATTCCTTCTTTGTCC-TGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAAC 1011423 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || || || ||||| |||| |||||| || ||||| ||||| Sbjct 1011424 CTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 >seq12201 Length=3704 Score = 96.9 bits (106), Expect = 4e-15 Identities = 76/89 (85%), Gaps = 3/89 (3%) Strand=Plus/Plus Query 56998 AAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 ||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 2456 AAAAATTAATTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 2515 Query 57056 ACTCACCACTATACTACCGAGGA-TTGAA 57083 ||| |||||||||||||||| || ||||| Sbjct 2516 ACTGACCACTATACTACCGAAGACTTGAA 2544 >seq19759 Length=438261 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/94 (83%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 56995 ATGAAAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 || ||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 201209 ATCAAAAATTAAATTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 201268 Query 57052 ACATACTCACCACTATACTACCGAGGA--TTGAA 57083 ||||| |||||||||||||||| || ||||| Sbjct 201269 GGATACTTACCACTATACTACCGAAGAAGTTGAA 201302 >seq32564 Length=387822 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/79 (86%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059 ||||| ||||| ||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 325585 AAATTCTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 325642 Query 57060 ACCACTATACTACCGAGGA 57078 |||||||||||||||| || Sbjct 325643 ACCACTATACTACCGAAGA 325661 >seq17254 Length=298303 Score = 91.5 bits (100), Expect = 2e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 55813 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 55872 Query 57065 TATACTACCG-AGGATTGAA 57083 |||||||||| || |||||| Sbjct 55873 TATACTACCGAAGAATTGAA 55892 >seq38424 Length=212 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 ||||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 2 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 61 Query 57065 TATACTACCGAGGA 57078 ||||||||||| || Sbjct 62 TATACTACCGAAGA 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542869435189120