Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 120 3e-22
seq12201 96.9 4e-15
seq19759 93.3 5e-14
seq32564 91.5 2e-13
seq17254 91.5 2e-13
seq38424 89.7 6e-13
>seq16708
Length=1145218
Score = 120 bits (132), Expect = 3e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||||| | | || |||| ||| | ||| ||||||||| || ||||||||||
Sbjct 653814 ACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 653873
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || | || |||| |||||| |||||||| || | |||||||| || | ||
Sbjct 653874 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 653933
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | |||||||||| |||||| ||| | || | | |||||| | ||| ||
Sbjct 653934 AATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 653993
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| | ||||||||||| || || || |||||||| || || ||||||
Sbjct 653994 TTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042
Score = 118 bits (130), Expect = 1e-21
Identities = 152/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||| ||| | ||| ||||||||| || |||||||||| ||||| || | || |||
Sbjct 654517 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654576
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
| |||||| |||||||| || | |||||||| || | || | | |||||||||| |
Sbjct 654577 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654636
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
||||| ||| | || | | |||||| | ||| || || | |||||||||||
Sbjct 654637 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654696
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| || || |||||||| || || ||||||
Sbjct 654697 CCTGTGAGAGTCTTTACGAAAATCTGCATT 654726
Score = 109 bits (120), Expect = 6e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||||||| | || |||||| ||||| ||||| || | || ||| || | || ||
Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|||||||| |||||||| || | |||||||| || | || | | |||||||||| |
Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
||||| ||| | || | | |||||| | ||| || || | |||||||||||
Sbjct 654181 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654240
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|| || || |||||||| || || ||||||
Sbjct 654241 CCTGTGAGAGTCTTTACGAAAATCTGCATT 654270
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059
|||| ||| | ||| ||||||||| || |||||||||| ||||| || | || |||
Sbjct 654973 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAGAGAGTACGTCCATCCTCT 655032
Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119
|| ||||| |||||||| || | |||||||| || | || | | ||||| ||| |
Sbjct 655033 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 655092
Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179
||||| ||| | | | | |||||| | ||| || || | |||||||||||
Sbjct 655093 ATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTTTTC 655152
Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || ||||| |||||||| |||||
Sbjct 655153 CCTGTGAGAGTCTTGACAAAGATCTGCAT 655181
Score = 86.0 bits (94), Expect = 7e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||| | || | |||| ||| | ||| ||||| || |||||||||||||
Sbjct 1010333 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010392
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || ||| | || || || || || |||||||| || ||||| || ||||| | ||
Sbjct 1010393 AGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGT 1010452
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | ||| |||||| ||| | || | |||| || | | ||| ||| | || ||
Sbjct 1010453 ATTCCCTCTTTGTCC-TGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAAC 1010511
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209
|||| || || || ||||| || | ||||| ||||| || ||||||
Sbjct 1010512 CTCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCATT 1010560
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|| ||||| | || | |||| ||| | ||| ||||| || |||||||||||||
Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || || | || || || || || |||||||| || | ||| || ||||| | ||
Sbjct 1011305 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011364
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160
| | || |||||| ||| |||| | |||| || | | ||| ||| | || ||
Sbjct 1011365 ATTCCTTCTTTGTCC-TGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAAC 1011423
Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|||| || || || ||||| |||| |||||| || ||||| |||||
Sbjct 1011424 CTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471
>seq12201
Length=3704
Score = 96.9 bits (106), Expect = 4e-15
Identities = 76/89 (85%), Gaps = 3/89 (3%)
Strand=Plus/Plus
Query 56998 AAAAATT--TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
||||||| ||||| |||| | |||||||||| ||||||||||||||||||||| ||
Sbjct 2456 AAAAATTAATTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 2515
Query 57056 ACTCACCACTATACTACCGAGGA-TTGAA 57083
||| |||||||||||||||| || |||||
Sbjct 2516 ACTGACCACTATACTACCGAAGACTTGAA 2544
>seq19759
Length=438261
Score = 93.3 bits (102), Expect = 5e-14
Identities = 78/94 (83%), Gaps = 5/94 (5%)
Strand=Plus/Plus
Query 56995 ATGAAAAATT---TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051
|| ||||||| ||||| |||| | |||||||||| |||||||||||||||||||||
Sbjct 201209 ATCAAAAATTAAATTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 201268
Query 57052 ACATACTCACCACTATACTACCGAGGA--TTGAA 57083
||||| |||||||||||||||| || |||||
Sbjct 201269 GGATACTTACCACTATACTACCGAAGAAGTTGAA 201302
>seq32564
Length=387822
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/79 (86%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 57000 AAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 57059
||||| ||||| ||| | |||||||||| ||||||||||||||||||||| |||||
Sbjct 325585 AAATTCTCTCC--GGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTT 325642
Query 57060 ACCACTATACTACCGAGGA 57078
|||||||||||||||| ||
Sbjct 325643 ACCACTATACTACCGAAGA 325661
>seq17254
Length=298303
Score = 91.5 bits (100), Expect = 2e-13
Identities = 69/80 (86%), Gaps = 1/80 (1%)
Strand=Plus/Plus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 55813 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 55872
Query 57065 TATACTACCG-AGGATTGAA 57083
|||||||||| || ||||||
Sbjct 55873 TATACTACCGAAGAATTGAA 55892
>seq38424
Length=212
Score = 89.7 bits (98), Expect = 6e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
||||| |||| | |||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 2 TTCTCTCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCAC 61
Query 57065 TATACTACCGAGGA 57078
||||||||||| ||
Sbjct 62 TATACTACCGAAGA 75
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 542869435189120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |