Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 123 2e-23
seq10733 95.1 1e-14
>seq16708
Length=1145218
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| || || ||||||| ||| || || ||||| ||||||||||| |
Sbjct 653814 ACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 653873
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | || || | ||||||||| || | || | |||||||| || |||||
Sbjct 653874 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 653933
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394
|||||| || || || || | |||| ||||| ||| ||| | || ||| ||| || |
Sbjct 653934 AATTCCCTCCTTGTCCTGGA-TTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGA 653992
Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|||| | || | ||| || || || | ||| ||||||||||| ||||||
Sbjct 653993 CTTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042
Score = 122 bits (134), Expect = 9e-23
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| || || ||||||| ||| || || ||||| ||||||||||| |
Sbjct 654499 CCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 654558
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || | ||||||||| || | || | |||||||| || ||||||
Sbjct 654559 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654618
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || | |||| ||||| ||| ||| | || ||| ||| || ||
Sbjct 654619 ATTCCCTCCTTGTCCTGGA-TTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 654677
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| | || | ||| || || || | ||| ||||||||||| ||||||
Sbjct 654678 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654726
Score = 118 bits (130), Expect = 1e-21
Identities = 165/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| || || | ||||| || || || || ||||||||||| || |
Sbjct 654043 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAC 654102
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || ||||||||||| || |||| | |||||||| || ||||||
Sbjct 654103 AAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGA 654162
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || | |||| ||||| ||| ||| | || ||| ||| || ||
Sbjct 654163 ATTCCCTCCTTGTCCTGGA-TTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 654221
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| | || | ||| || || || | ||| ||||||||||| ||||||
Sbjct 654222 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654270
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| | ||||| || || ||||||| || ||||| || || || |||||||| | |
Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | ||||| || || || || || | || | || || ||||| ||||||
Sbjct 1011077 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011136
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||||||||| || || ||||| ||| || ||| | ||||| || || ||
Sbjct 1011137 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011196
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| | |||| ||||| || |||||||| || || ||||| ||||||
Sbjct 1011197 TCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCATT 1011244
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || ||||||||||| || |||||||| | || ||||| | |||
Sbjct 1010804 AGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCATCT 1010863
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| || || || || || | || || || || ||||| ||||||||||||||||| |||
Sbjct 1010864 TCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCT 1010923
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || || | ||||| || || || || | |||| |||
Sbjct 1010924 TGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTC 1010983
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||||| ||||| || || || ||||| ||||||
Sbjct 1010984 TTGCCTGTCAACGTCTTGACAAAAATCTGCATT 1011016
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| | || || || || ||||||| || ||||| || || || |||||||| | |
Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| ||||| | ||||| || || || || || | || | || || ||||| ||||||
Sbjct 1011305 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011364
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||||||||| || || ||||| ||| || ||| | ||||| || || ||
Sbjct 1011365 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011424
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| | |||| |||||||| || || || || ||||| || |||||
Sbjct 1011425 TCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
||||| | || || || || ||||||| ||||| ||||| || ||||| ||||| |
Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || | | ||||| || || || || || | || | || || ||||| ||||||
Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396
||||||||||| || || ||||| ||| ||| ||| | || || || || ||
Sbjct 1010225 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACC 1010284
Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
|| | |||| || ||||| ||||| || ||||| ||||| ||||||
Sbjct 1010285 TCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCATT 1010332
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| || || | ||||| || |||||||| |||||||||||||| |
Sbjct 654727 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGAT 654786
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || || |||||||| || | || | |||||||| || ||||||
Sbjct 654787 AGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654846
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || | |||| ||||| || || | ||||| || || ||
Sbjct 654847 ATTCCCTCCTTATCCTGGA-TTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGAC 654905
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| | || | || || || || | ||| ||||||||||| ||||||
Sbjct 654906 TTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654954
Score = 104 bits (114), Expect = 2e-17
Identities = 153/214 (71%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||||| ||||| || || || ||||| ||||| | | ||||| | |||
Sbjct 1009892 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAAAGTGTGCGTCCATCT 1009951
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| | |||||| || || | || | | |||||||| || |||||||||||||| |||
Sbjct 1009952 TCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCTTCTTTGTCT 1010011
Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| | |||| ||||| ||| || | ||||| || || ||||| | || | ||
Sbjct 1010012 TG-AATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGACTTCCAATGTGATAGT 1010070
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| || |||| ||| || || ||||| ||||||
Sbjct 1010071 CTTCCCAGTCAGAGTCTTAACAAAAATCTGCATT 1010104
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| || || ||||||| ||| || || ||||| ||||||||||| | |
Sbjct 654955 CCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAG 655014
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || || |||||||| || | || | |||||||| || ||||||
Sbjct 655015 AGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 655074
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||||| || || || | |||| ||||| || || | || || || || ||
Sbjct 655075 ATTCCTTCCTTATCCTGGA-TTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGAC 655133
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| | || | ||| || || || | ||| || || || || |||||
Sbjct 655134 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 655181
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276
|| || || | ||| || || | ||||| || || || || |||||||||||||| |
Sbjct 654271 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAT 654330
Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336
| || || | || || || |||||||| || | || | |||||||| || ||||||
Sbjct 654331 AGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654390
Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395
||||| || || || || | |||| ||||| || || | ||||| || || ||
Sbjct 654391 ATTCCCTCCTTATCCTGGA-TTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGAC 654449
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444
||| | || | || || || || | ||| ||||||||||| ||||||
Sbjct 654450 TTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654498
>seq10733
Length=171697
Score = 95.1 bits (104), Expect = 1e-14
Identities = 115/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646
|| ||||| ||||| ||||||| ||| || | |||| ||||| |||||||| | |||
Sbjct 126100 GAAGCCAAATTGCATACGGCAACTTCATCCGGACTAGAATATTGTACAATTTCCGTACAC 126159
Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706
|||||||||||| ||| || || | |||| ||||||||||| |||||| ||
Sbjct 126160 AAATTACTGCATTTAATTGTTCCTATATTTTGATGATTCGATTTACGGTTGCAATGATCC 126219
Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743
|| || | || | || || || ||||| |||||||
Sbjct 126220 TTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256
Score = 91.5 bits (100), Expect = 1e-13
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 154020 TTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGC 154079
|||| |||||||| || || | ||| || | | ||| | |||| |||| | ||
Sbjct 125699 TTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGTATATGGT 125758
Query 154080 TCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACC 154139
|| | ||||| || || |||| || || ||||||| ||||| |||||| ||| |
Sbjct 125759 TCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGGCGCAATT 125818
Query 154140 AACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCAC 154199
| |||||| || | | |||||||| || || ||| || ||||||||| |||
Sbjct 125819 AGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCAATCCCAT 125878
Query 154200 AAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAA 154239
|| | ||||| || |||||||| |||||||||||||
Sbjct 125879 AAATCCGTAGGCGTAACATTCCACATATCGTATTGCAAAA 125918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499328974521920
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