Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq16708 123 2e-23 seq10733 95.1 1e-14 >seq16708 Length=1145218 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || ||||||| ||| || || ||||| ||||||||||| | Sbjct 653814 ACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 653873 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || | ||||||||| || | || | |||||||| || ||||| Sbjct 653874 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 653933 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||| || || || || | |||| ||||| ||| ||| | || ||| ||| || | Sbjct 653934 AATTCCCTCCTTGTCCTGGA-TTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGA 653992 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 |||| | || | ||| || || || | ||| ||||||||||| |||||| Sbjct 653993 CTTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || ||||||| ||| || || ||||| ||||||||||| | Sbjct 654499 CCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 654558 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || | ||||||||| || | || | |||||||| || |||||| Sbjct 654559 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654618 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || | |||| ||||| ||| ||| | || ||| ||| || || Sbjct 654619 ATTCCCTCCTTGTCCTGGA-TTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 654677 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | ||| || || || | ||| ||||||||||| |||||| Sbjct 654678 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654726 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || | ||||| || || || || ||||||||||| || | Sbjct 654043 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAC 654102 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || ||||||||||| || |||| | |||||||| || |||||| Sbjct 654103 AAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGA 654162 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || | |||| ||||| ||| ||| | || ||| ||| || || Sbjct 654163 ATTCCCTCCTTGTCCTGGA-TTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 654221 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | ||| || || || | ||| ||||||||||| |||||| Sbjct 654222 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654270 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | ||||| || || ||||||| || ||||| || || || |||||||| | | Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| || || || || || | || | || || ||||| |||||| Sbjct 1011077 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011136 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| || || ||||| ||| || ||| | ||||| || || || Sbjct 1011137 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011196 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | |||| ||||| || |||||||| || || ||||| |||||| Sbjct 1011197 TCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCATT 1011244 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||| || |||||||| | || ||||| | ||| Sbjct 1010804 AGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCATCT 1010863 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || || | || || || || ||||| ||||||||||||||||| ||| Sbjct 1010864 TCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCT 1010923 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | ||||| || || || || | |||| ||| Sbjct 1010924 TGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTC 1010983 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| ||||| || || || ||||| |||||| Sbjct 1010984 TTGCCTGTCAACGTCTTGACAAAAATCTGCATT 1011016 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | || || || || ||||||| || ||||| || || || |||||||| | | Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| || || || || || | || | || || ||||| |||||| Sbjct 1011305 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011364 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| || || ||||| ||| || ||| | ||||| || || || Sbjct 1011365 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011424 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | |||| |||||||| || || || || ||||| || ||||| Sbjct 1011425 TCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| | || || || || ||||||| ||||| ||||| || ||||| ||||| | Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| || || || || || | || | || || ||||| |||||| Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||||||||| || || ||||| ||| ||| ||| | || || || || || Sbjct 1010225 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACC 1010284 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | |||| || ||||| ||||| || ||||| ||||| |||||| Sbjct 1010285 TCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCATT 1010332 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || | ||||| || |||||||| |||||||||||||| | Sbjct 654727 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGAT 654786 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || || |||||||| || | || | |||||||| || |||||| Sbjct 654787 AGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654846 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || | |||| ||||| || || | ||||| || || || Sbjct 654847 ATTCCCTCCTTATCCTGGA-TTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGAC 654905 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | || || || || | ||| ||||||||||| |||||| Sbjct 654906 TTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654954 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||||| ||||| || || || ||||| ||||| | | ||||| | ||| Sbjct 1009892 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAAAGTGTGCGTCCATCT 1009951 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || || | || | | |||||||| || |||||||||||||| ||| Sbjct 1009952 TCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCTTCTTTGTCT 1010011 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | |||| ||||| ||| || | ||||| || || ||||| | || | || Sbjct 1010012 TG-AATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGACTTCCAATGTGATAGT 1010070 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || |||| ||| || || ||||| |||||| Sbjct 1010071 CTTCCCAGTCAGAGTCTTAACAAAAATCTGCATT 1010104 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || ||||||| ||| || || ||||| ||||||||||| | | Sbjct 654955 CCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAG 655014 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || || |||||||| || | || | |||||||| || |||||| Sbjct 655015 AGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 655074 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||| || || || | |||| ||||| || || | || || || || || Sbjct 655075 ATTCCTTCCTTATCCTGGA-TTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGAC 655133 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | ||| || || || | ||| || || || || ||||| Sbjct 655134 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 655181 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | ||| || || | ||||| || || || || |||||||||||||| | Sbjct 654271 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAT 654330 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || || |||||||| || | || | |||||||| || |||||| Sbjct 654331 AGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654390 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || | |||| ||||| || || | ||||| || || || Sbjct 654391 ATTCCCTCCTTATCCTGGA-TTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGAC 654449 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| | || | || || || || | ||| ||||||||||| |||||| Sbjct 654450 TTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654498 >seq10733 Length=171697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || ||||| ||||| ||||||| ||| || | |||| ||||| |||||||| | ||| Sbjct 126100 GAAGCCAAATTGCATACGGCAACTTCATCCGGACTAGAATATTGTACAATTTCCGTACAC 126159 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 |||||||||||| ||| || || | |||| ||||||||||| |||||| || Sbjct 126160 AAATTACTGCATTTAATTGTTCCTATATTTTGATGATTCGATTTACGGTTGCAATGATCC 126219 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 || || | || | || || || ||||| ||||||| Sbjct 126220 TTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 154020 TTAATTACTTGAAAATCGCCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGC 154079 |||| |||||||| || || | ||| || | | ||| | |||| |||| | || Sbjct 125699 TTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGTATATGGT 125758 Query 154080 TCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACC 154139 || | ||||| || || |||| || || ||||||| ||||| |||||| ||| | Sbjct 125759 TCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGGCGCAATT 125818 Query 154140 AACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCAC 154199 | |||||| || | | |||||||| || || ||| || ||||||||| ||| Sbjct 125819 AGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCAATCCCAT 125878 Query 154200 AAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAA 154239 || | ||||| || |||||||| ||||||||||||| Sbjct 125879 AAATCCGTAGGCGTAACATTCCACATATCGTATTGCAAAA 125918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499328974521920