Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq16708 107 2e-18 >seq16708 Length=1145218 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| || || | ||| | ||| | | | ||||| || || ||||| || ||| Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | || ||||||||||| || | |||| | || |||||||||||||| Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | || | | || | ||||||| | ||| || Sbjct 1010225 ATTCCTTCTTTGTCC-TGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAAC 1010283 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | |||||| || |||| || ||||||||||||||||| Sbjct 1010284 CTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| ||| || | ||| | ||| | | || ||||| || || ||||| || Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || ||||||||||| || | |||| | || |||||||||||||| Sbjct 1011077 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011136 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | || | | || | || |||| | ||| || Sbjct 1011137 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAAC 1011195 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||| || ||||||| ||| || |||||||||||||| Sbjct 1011196 CTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||||| || || | ||| | ||| | | || ||||| || || ||||| || Sbjct 1010333 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010392 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| || ||||||||||| || | |||| || || ||||||||||||||| Sbjct 1010393 AGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGT 1010452 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | || | || | | || | || |||| | ||| || Sbjct 1010453 ATTCCCTCTTTGTC-CTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAAC 1010511 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | ||| || || |||| || || |||||||||||||| Sbjct 1010512 CTCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCAT 1010559 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || ||||||||||| || | |||| || || |||||||||||||| || ||||||||| Sbjct 1010861 TCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTG 1010920 Query 138520 TCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || ||| | || | || | | ||| | || |||| | ||| ||||||| || | Sbjct 1010921 TC-TTGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTAT 1010979 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| || || |||| || || |||||||||||||| Sbjct 1010980 CGTCTTGCCTGTCAACGTCTTGACAAAAATCTGCAT 1011015 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | |||||| ||||| ||||| || || | Sbjct 654988 GACTCCTTTTGGATGTTGTAATCAGAGAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCG 655047 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | |||||| || || ||||| || ||||| || || |||||| ||| | Sbjct 655048 AAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTCACG 655107 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || || || | || | ||||| || || ||||| || Sbjct 655108 TTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTG 655167 Query 138601 ACAAAAATCTGCATGG 138616 ||||| |||||||||| Sbjct 655168 ACAAAGATCTGCATGG 655183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| ||||| || || || || | Sbjct 654076 GACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCCAGCTGCTTGCCAGCG 654135 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 | || | |||||| || || ||||| || || || ||||| |||||| ||| | Sbjct 654136 AAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGATTTTGGCTTTCACA 654195 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||| | | || || || | || | ||||| || || ||||| ||| Sbjct 654196 TTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTT 654255 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 654256 ACGAAAATCTGCAT 654269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| | ||| | | | |||||||| || ||||| || || Sbjct 1009877 CCTCCTCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAA 1009936 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | || || || | |||| | | || |||||||| || Sbjct 1009937 AGTGTGCGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGA 1009996 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| ||| |||| | ||| | | ||| | ||| |||| || ||| || Sbjct 1009997 ATTCCTTCTTTGTC-TTGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGAC 1010055 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||||||| || |||||||||||||| Sbjct 1010056 TTCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCAT 1010103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495948712536960