Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq10258 122 2e-23 >seq10258 Length=339 Score = 122 bits (134), Expect = 2e-23 Identities = 131/171 (77%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 8947 AAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTG 9006 ||||| ||||| | ||||| ||||||||||| ||| | ||||||||||| ||||| || Sbjct 31 AAGCGTCCCGTAAACTCCGACCTGCGCGAGTCCGGTTCTATCGAGCAGGACGCCGATCTG 90 Query 9007 ATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGAT-CGCGGTACGGC 9065 ||| | ||||||||||| |||||||||||| || | |||| | || |||| || Sbjct 91 ATCATGTTTATCTACCGTGATGAGGTCTATCACGAGAATAGCG-ATATGAAAGGTATCGC 149 Query 9066 CGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCT 9116 ||||| || | | |||||| ||||||| || |||||||| || ||||| Sbjct 150 TGAAATTATTCTCGGCAAGCAGAGAAACGGCCCCATTGGCACTGTGCGGCT 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127469009504928