Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq16708 163 7e-35 seq21758 87.8 4e-12 >seq16708 Length=1145218 Score = 163 bits (180), Expect = 7e-35 Identities = 169/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||||||| || || || || ||||||||||||| |||||| |||| | ||| Sbjct 654961 CGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAGAGAGTA 655020 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||| || |||||||| | ||||||||| || ||| ||||||| Sbjct 655021 CGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCT 655080 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || |||||| ||||| ||||||| | ||| || |||| Sbjct 655081 TCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAG 655139 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || ||||| || || Sbjct 655140 GGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTG 655178 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||||||||||||||| || || || || ||||||||||||| |||||| |||| | ||| Sbjct 653820 TCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGT 653879 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||| || | |||||| || |||||||| | ||||||||| || ||| |||||| Sbjct 653880 TCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCC 653939 Query 199528 TTCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 || ||||| || ||| || ||||| |||| ||||| | | ||| || |||| Sbjct 653940 CTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCA 653998 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| || || || |||||||| || || ||||| || Sbjct 653999 AGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTG 654038 Score = 149 bits (164), Expect = 1e-30 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||||||| | || ||||| |||||||| || | ||||||||| | |||||| Sbjct 654049 CGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTA 654108 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| ||||||||||| || ||||| || | ||||||||| || ||| |||||| Sbjct 654109 CGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCC 654168 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || ||||| |||| ||||| | | ||| || |||| Sbjct 654169 TCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAG 654227 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || ||||| || Sbjct 654228 GGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTG 654266 Score = 145 bits (160), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||||||| | || ||||| |||||||| || | |||||| |||| | ||| Sbjct 654277 CGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTT 654336 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||| || |||||||| | ||||||||| || ||| |||||| Sbjct 654337 CGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCC 654396 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || |||||| ||||| || |||| | ||| || |||| Sbjct 654397 TCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAG 654455 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || ||||| || Sbjct 654456 GGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTG 654494 Score = 145 bits (160), Expect = 2e-29 Identities = 165/219 (75%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||||||| || || || || ||||||||||||| |||||| |||| | ||| Sbjct 654505 CGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTT 654564 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || | |||||| || |||||||| | ||||||||| || ||| |||||| Sbjct 654565 CGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCC 654624 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || ||||| |||| ||||| | | ||| || |||| Sbjct 654625 TCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAG 654683 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || ||||| || Sbjct 654684 GGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTG 654722 Score = 136 bits (150), Expect = 9e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||||||| | || ||||| || || || || | |||||| |||| | ||| Sbjct 654733 CGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTT 654792 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || || ||||| || |||||||| | ||||||||| || ||| |||||| Sbjct 654793 CGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCC 654852 Query 199529 TCTCGCTCCTGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| || ||| || |||||| ||||| || |||| | ||| || |||| Sbjct 654853 TCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAG 654911 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || ||||| || Sbjct 654912 GGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTG 654950 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || || ||||||||||| |||| ||| || |||| | || | ||||||| Sbjct 1009892 AGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAAAGTGTGCGTCCATCT 1009951 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || | ||||||||| |||||||| | | ||||||||||| |||||||||| || Sbjct 1009952 TCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCTTCTTTGTCT 1010011 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| ||| || ||||| ||||| ||| || | | || || ||||| ||||| || Sbjct 1010012 TGAAT-TTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGACTTCCAATGTGATAGT 1010070 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || ||||| || |||||||| || Sbjct 1010071 CTTCCCAGTCAGAGTCTTAACAAAAATCTG 1010100 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || || ||||| || ||||| || | ||||| |||| | || | |||||| Sbjct 1010576 AGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCC 1010635 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| | || || || |||||| ||||| ||| ||| Sbjct 1010636 TCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTGTCC 1010695 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 ||||| || ||| || || | || || | | || || ||||| ||||| ||| Sbjct 1010696 TGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATAGTC 1010755 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||||||||||| || Sbjct 1010756 TTCCCAGTCAACGTTTTCACAAAAATCTG 1010784 Score = 104 bits (114), Expect = 6e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || || || || || |||||||| || |||| ||| || || | | || ||| Sbjct 1010114 AGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTT 1010173 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| || || ||||| |||||||| | || || ||||||||| |||||||||| Sbjct 1010174 CCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCT 1010233 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 |||||||| || ||| || |||| ||||| | | || || || | || Sbjct 1010234 TTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTT 1010293 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || | || || |||||||| || Sbjct 1010294 ATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTG 1010328 Score = 95.1 bits (104), Expect = 3e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199412 AGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTT 199471 |||| || || || || ||||| || ||||| || | ||||| |||| | || | Sbjct 1010342 AGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGC 1010401 Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| || || ||||| |||||||| || || || ||||||||| ||||| ||| Sbjct 1010402 CCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGTATTCCCTCT 1010461 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| ||| || |||| || || | | || || || | || Sbjct 1010462 TTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAACCTCGAGGGTT 1010521 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || | || || |||||||| || Sbjct 1010522 ATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTG 1010556 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 || ||||| || |||||| |||| |||||| | |||||| | || |||||| | ||||| Sbjct 654140 ATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTTTGTCGGACTACAACATTCAGAAG 654081 Query 200998 GAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||||||||| | || |||||||||| Sbjct 654080 GAGTCTACTCTTCATTTGGTCCTGAGACTTCG 654049 >seq21758 Length=261 Score = 87.8 bits (96), Expect = 4e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||| ||||||||||||||||| ||||| | || || || |||||| ||||| || Sbjct 257 TCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTC 198 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 | |||||||| || ||| || || | || || | | || || ||||| || Sbjct 197 TTTGTCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGT 138 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || | |||||||||||||| || Sbjct 137 GATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTG 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178157773748056