Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 114 1e-20
>seq16708
Length=1145218
Score = 114 bits (126), Expect = 1e-20
Identities = 162/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||||| | | || |||||||| | || |||||||||||| ||||| || |||
Sbjct 653815 CCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 653874
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || | || || | ||||||||| ||||| ||||| |||||||| || | ||
Sbjct 653875 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 653934
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | |||||||||| ||| || || | || | | |||||| | ||| ||
Sbjct 653935 ATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACT 653994
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||| ||||||||||| || || || || || || || || ||||||
Sbjct 653995 TCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042
Score = 113 bits (124), Expect = 5e-20
Identities = 151/210 (72%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||||||||| ||||| || |||||||| || | || ||
Sbjct 654517 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654576
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
| ||||||||| ||||| ||||| |||||||| || | || | | |||||||||| |
Sbjct 654577 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654636
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| || || | || | | |||||| | ||| || |||| |||||||||||
Sbjct 654637 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654696
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| || || || || || || || ||||||
Sbjct 654697 CCTGTGAGAGTCTTTACGAAAATCTGCATT 654726
Score = 104 bits (114), Expect = 3e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||| ||| | ||| |||||| || || |||||||| || | ||| || | || ||
Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||| ||||| ||||| |||||||| || | || | | |||||||||| |
Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| || || | || | | |||||| | ||| || |||| |||||||||||
Sbjct 654181 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654240
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|| || || || || || || || ||||||
Sbjct 654241 CCTGTGAGAGTCTTTACGAAAATCTGCATT 654270
Score = 102 bits (112), Expect = 9e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|||||||| | || |||||||||||| ||||| || || ||||| || | || ||
Sbjct 654973 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAGAGAGTACGTCCATCCTCT 655032
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| |||||||| ||||| ||||| |||||||| || | || | | ||||| ||| |
Sbjct 655033 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 655092
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
|| || || | | | | |||||| | ||| || |||| |||||||||||
Sbjct 655093 ATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTTTTC 655152
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || || || |||||||| |||||
Sbjct 655153 CCTGTGAGAGTCTTGACAAAGATCTGCAT 655181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564881112807360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |