Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 129 6e-25
seq48246 104 2e-17
seq21718 102 8e-17
seq36416 87.8 2e-12
>seq16708
Length=1145218
Score = 129 bits (142), Expect = 6e-25
Identities = 157/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || |||||||| || ||||| || |||||||||||| | || ||||| ||| |
Sbjct 654270 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTC 654211
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | |||| ||||||| ||||| ||||||||||| | || ||
Sbjct 654210 TGACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCA 654151
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | |||| ||| ||||| |||||||| || | || || | ||||||||
Sbjct 654150 GCAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTTTGTCGGACTACAA 654091
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
||| || ||||| | || || |||||||| |||
Sbjct 654090 CATTCAGAAGGAGTCTACTCTTCATTTGGTCCTG 654057
Score = 125 bits (138), Expect = 7e-24
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || |||||||| || ||||| || |||||||||||| | || ||||| ||| |
Sbjct 654042 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCTTGGAAGTCGAAGCCTC 653983
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | |||| ||||||| ||||| ||||||||||| | || ||
Sbjct 653982 TGACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCA 653923
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||| ||| | || || | || || || || |||||
Sbjct 653922 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACAA 653863
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||||||||||| | ||||| ||| |||| |||
Sbjct 653862 CATCCAAAAGGAGTCCACGCTTCATCTGGTCCTG 653829
Score = 125 bits (138), Expect = 7e-24
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || |||||||| || ||||| || |||||||||||| | || ||||| ||| |
Sbjct 654726 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTC 654667
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | | | |||| ||||||| ||||| ||||||||||| | || ||
Sbjct 654666 TGACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCA 654607
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||| ||| | || || | || || || || |||||
Sbjct 654606 GCAGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACAA 654547
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||||||||||| | ||||| ||| |||| |||
Sbjct 654546 CATCCAAAAGGAGTCCACGCTTCATCTGGTCCTG 654513
Score = 113 bits (124), Expect = 5e-20
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || ||||| || |||||||||||| | || ||||| || |
Sbjct 655181 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCTTCA 655122
Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | ||||| | |||| ||||||| || || || |||||||| | || ||
Sbjct 655121 GACACGATCGAAAACG-TGAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCA 655063
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||| ||||| || || || || | || || ||| || |||||
Sbjct 655062 GCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGTACTCTCTCTGATTACAA 655003
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||||||||||| | ||||| ||| |||| |||
Sbjct 655002 CATCCAAAAGGAGTCCACGCTTCATCTGGTCCTG 654969
Score = 109 bits (120), Expect = 5e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || | || || || || || ||| |||| || ||||| |
Sbjct 1011244 AATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTC 1011185
Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
||| | | || |||| | || | ||||| | |||||||| |||||||| | ||||
Sbjct 1011184 CGATACGATTGAGAACG-TCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACC 1011126
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
|||| || | || | ||| || ||||| || || || | ||||| ||| || ||||
Sbjct 1011125 AACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACA 1011066
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
| || || |||||| | || || ||| |||| || || |||||||||||
Sbjct 1011065 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGCGG 1011017
Score = 105 bits (116), Expect = 7e-18
Identities = 154/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || |||||||| || ||||| || ||||| |||||| | || ||||| || |
Sbjct 654498 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTC 654439
Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | ||||| | |||| ||||||| || || ||||||||||| | || |
Sbjct 654438 AGATACGATCGAAAACG-TGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATC 654380
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | ||| ||||| || || || || | || || || || ||||
Sbjct 654379 AGCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACA 654320
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| || ||||| | || || |||||||| |||
Sbjct 654319 ACATTCAGAAGGAGTCTACTCTTCATTTGGTCCTG 654285
Score = 105 bits (116), Expect = 7e-18
Identities = 154/215 (72%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || |||||||| || ||||| || ||||| |||||| | || ||||| || |
Sbjct 654954 AATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTC 654895
Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | ||||| | |||| ||||||| || || ||||||||||| | || |
Sbjct 654894 AGATACGATCGAAAACG-TGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATC 654836
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | ||| ||||| || || || || | || || || || ||||
Sbjct 654835 AGCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACA 654776
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| || || ||| | || || |||||||| |||
Sbjct 654775 ACATTCAGAAAGAATCTACTCTTCATTTGGTCCTG 654741
Score = 105 bits (116), Expect = 7e-18
Identities = 160/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || || || | || ||||| || || ||| |||| || ||||| |
Sbjct 1010560 AATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010501
Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
||| | | | | | || | || || | |||||||||||||| || | |||||
Sbjct 1010500 CGATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGAATACCTCCGGACCA 1010441
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || || || | ||| || ||||| || || || | |||||| ||| || |||||
Sbjct 1010440 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCTCTGATTACAA 1010381
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|| || |||||| | || || ||| |||| || || ||||||||||
Sbjct 1010380 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGG 1010333
Score = 100 bits (110), Expect = 3e-16
Identities = 161/229 (70%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
|||||| || || || |||||| | || || || || ||||| | || |||||||| |
Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729
Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | || || | | || | ||||| | |||||||||||||| || | || |
Sbjct 1010728 TGATACGATTGAGAATG-TCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGATC 1010670
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
|||| || | || | || || || |||||||| || | ||||| ||| || ||||
Sbjct 1010669 AACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACA 1010610
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
| || || |||||| | || || ||| |||| || || |||||||| ||
Sbjct 1010609 ATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGG 1010561
>seq48246
Length=3565318
Score = 104 bits (114), Expect = 2e-17
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245
|| |||||||| ||||| ||||||||||| || | ||||||||| || || || || |||
Sbjct 2532235 GAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGAAAGCCATAGAAACAGCGTGCC 2532294
Query 133246 TCGACCACCTGCACTTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTC 133304
|| ||| || |||||||| || ||| || || || ||||| || || ||||| |||||
Sbjct 2532295 TCTGTCACTTGAACTTCTTG-GCTAAATCGTTCTACGAGATTCTCATTAACGATACCGTC 2532353
Query 133305 GCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG 133364
| || ||||| || || | |||||| || || || |||| | |||| ||
Sbjct 2532354 GGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGTGTTTCTCGCTAGCGTTTAAAAT 2532413
Query 133365 CTCCCAGTC 133373
||||||||
Sbjct 2532414 ATCCCAGTC 2532422
>seq21718
Length=958615
Score = 102 bits (112), Expect = 8e-17
Identities = 138/191 (72%), Gaps = 1/191 (1%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| |||||||| ||||| || ||||| ||||| || ||| |||| || ||||| ||
Sbjct 51270 ATGCAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCTTCC 51211
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | |||| ||| || | |||||||||||||| || |||| |||
Sbjct 51210 GACACTATCGAGAATGTGAAAGCAAAGATTCAAGACAAAGAGGGAATCCCACCCGATCAA 51151
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | || || || || |||| || | |||||||| ||| || |||
Sbjct 51150 CAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTATAAC 51091
Query 38424 ATCCA-AAAGG 38433
|| || |||||
Sbjct 51090 ATTCAGAAAGG 51080
>seq36416
Length=241146
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405
|||||||| |||| ||||| | || |||| || |||||||| |||| || | | |
Sbjct 80530 GGAATTCCACCCGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAGA 80589
Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465
|| || ||| || |||||||||||||| | ||| | ||||||||| | || ||||||
Sbjct 80590 ACTCTGTCCGATTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAGA 80649
Query 38466 GGCGGC 38471
||||||
Sbjct 80650 GGCGGC 80655
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499856640773120
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