Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_014036.1 Length=174436 Score E Sequences producing significant alignments: (Bits) Value seq12851 152 6e-32 >seq12851 Length=316 Score = 152 bits (168), Expect = 6e-32 Identities = 220/309 (71%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 41185 TTAACGCTGTAACCTCT---GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGG 41241 |||||||| ||||| ||||| || || ||| | || || || || || || || Sbjct 11 TTAACGCT---ACCTCCAGCGCGATTGTAAAATATGTATCCCAGCGCGCCGGGATAGGCA 67 Query 41242 TTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATA 41301 | || || || | ||| ||||| |||| || || || || |||||| | |||| Sbjct 68 TCAATGCCGGCCGTATCCGCGCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCATA 127 Query 41302 CTGGTGTGATTCCTTTCTGGAAACATATCCAAACCGCTGTTAAATCCTGTTCACAGGGTG 41361 | ||| ||||| |||| |||||| |||| ||||| || ||||||||||| ||||| | Sbjct 128 CCGGTTGTATTCCGTTCTATAAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGCG 187 Query 41362 GCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACC 41421 |||| || || || || || || ||| |||||| | |||||| |||| | |||| | Sbjct 188 GCGTGCGCGGCGGCGCGGCCACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGTC 247 Query 41422 TTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTACG 41481 | |||||| | || ||||| ||||| |||| ||||| || || ||| | ||||||| Sbjct 248 TGCTGGTGCTAAAAAACAATCGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTACG 307 Query 41482 GTGTACAGC 41490 | ||||||| Sbjct 308 GCGTACAGC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557714445722880