Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1 210 2e-48 seq48246 167 2e-35 seq12473 131 1e-24 seq14976 86.0 5e-11 >seq1 Length=1408590 Score = 210 bits (232), Expect = 2e-48 Identities = 728/1119 (65%), Gaps = 20/1119 (2%) Strand=Plus/Minus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || |||||||| | || | ||||| | ||||| ||||| || | |||||||| ||| Sbjct 64953 GTAGATTTATCCACCGCGGATACATTCAAGATACCGTTGGCGTCGATGTCAAATGTAACT 64894 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 || || ||||| || ||||| | || || || || || | | |||| | || | Sbjct 64893 TCGATCTGAGGAACTCCTCTAGGTGCTGGCGGAATACCGCTGAGCTCAAATTTACCTAAC 64834 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 ||| || || || || | ||||| |||||| | | || || || | | Sbjct 64833 AGATTGTTGTCCTTCGTCATAGCACGTTCTCCCTCGTACACCTGAATCAACACACCCGGC 64774 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 |||||||| | || || || || | || | ||| ||||| || |||||||| Sbjct 64773 TGATTATCAGCGTAGGTGGTGAAGGTTTGGGTCTGTTTGGTTGGAATGGTGGTGTTTCTC 64714 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 | |||| ||||| | ||| || || ||||| | |||||||||||| || || || Sbjct 64713 TTGATAAGGGCAGTCATGACACCGCCAGCCGTTTCAATACCAAGAGAAAGTGGTGTAACG 64654 Query 517544 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 517603 || | || | | || ||| | || || | | || |||||| || ||||| Sbjct 64653 TCGAGAAGCAGTAGATCTTGTACTTCCTCGGACTTGTCGCCGTGAAGAATGGCGGCTTGT 64594 Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 | ||||| || || || |||||||| |||||||| | | | || | | || || Sbjct 64593 ACGGCAGCTCCGTAAGCTACAGCTTCGTCAGGATTGATGGACTTGTTCAACTCCTTTCCG 64534 Query 517664 TTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 ||||| || | || || | ||| | ||| || ||||| | ||||| ||||| || Sbjct 64533 TTGAAGAAGTCCTGCAGCAGCT-TCTGGATCTTGGGGATACGCGTGGATCCACCAACCAA 64475 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 || || || || | ||||| || |||| || | ||| | ||| || || || Sbjct 64474 AACGATGTCGTGGATCTGTGCCTTGTCCATCTTGGCATCGCGCAGCGATTTCTCTACTGG 64415 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 || ||| |||| || | || | || || |||||||| ||| || || || Sbjct 64414 CTCCAGAGTTCCTCTGAAAAGATCAGCGCAGAGCTCTTCGAACCGAGCCCTGGT--GATC 64357 Query 517843 GACAT-TA-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 517900 ||| | || |||| ||||| ||| ||| ||||| | || || | | |||||| || Sbjct 64356 GACGTGTAGAAATCGATTCCCTCGTACAGTGAATCGATCTCGATGCTGGCTTGAGTAGAC 64297 Query 517901 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTG 517958 ||||| | || || || |||||||| || || || || || | || | || || |||| Sbjct 64296 GAAGACAATGTGCGCTTCGCACGTTCGCACGCCGTTCTCAGACGGCGCAGAGCGCGTTTG 64237 Query 517959 CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATGTTACA 518017 || | | ||| || | || ||||| | |||||| || | ||| | | || |||| Sbjct 64236 TTGCTGG--TCAGGTCCTTCTTGTATTTACGCTTGAATTCCTGAACGAAATGAT-TTACC 64180 Query 518018 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 518077 | ||| || || |||||||| || || | | ||| | ||||| |||| | || | | Sbjct 64179 ATACGGTTGTCGAAATCTTCGCCGCCAAGATGAGTGTCTCCTGCTGTAGACTTGACCTCG 64120 Query 518078 AAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAA 518137 |||| || ||||| | | || || | ||||| ||| ||||| || | ||||| Sbjct 64119 AAAATACCGTCTTCGATCGTCAGAATCGACACATCGAAGGTGCCACCGCCGAGGTCAAAG 64060 Query 518138 ATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAG 518195 || || || || || ||| ||| || ||||| || ||||| |||| || |||| Sbjct 64059 ATTAGGACGTTGCGCTCGTTG--GTGGTCTTCTTATCCAGGCCATATGCAATGGCGGCAG 64002 Query 518196 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 518255 | || || ||||| || || | || || || | || | || |||| || || || | Sbjct 64001 CGGTAGGCTCATTGATGATACGTAATACGTTCAAGCCTGAGATGGTTCCAGCGTCCTTGG 63942 Query 518256 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTT 518315 | || || | || || ||||| || || ||||| ||||| || ||||||| || || Sbjct 63941 TTGCCTGACGCTGCGAGTCGTTGAAGTAAGCAGGCACAGTGATCACGGCATTGGTGACGA 63882 Query 518316 CTTTACCAATATAAGCGCTT--GCCGTTTGTTTCATTTT 518352 |||||| | || ||||| || |||| |||||||| Sbjct 63881 TTTTACCGAGGTA--CGCTTCGGCAGTTTCCTTCATTTT 63845 Score = 89.7 bits (98), Expect = 4e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 || || || ||| | || || || ||| |||||| |||||||||||| || |||| || Sbjct 62965 AAGATGGTGTTGTTGGGGTTCATGGCAACTTGATTTTTGGCTGCATCCCCGATCAACCGT 62906 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 || || || || |||| ||| || || ||||| ||||| ||||||||||| || || Sbjct 62905 TCGGTGTCCGTGAATGCAACGTAGCTCGGCGTTGTACGATTTCCTTGATCATTGGCGATG 62846 Query 518645 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 || || ||||| || | || | || || || || | || || || | ||||||| Sbjct 62845 ATCTCCACTTTCCCGTGCTGGAACACGCCAACGCAGGAGTACGTGGTGCCAAGATCAATA 62786 Query 518705 CC 518706 || Sbjct 62785 CC 62784 >seq48246 Length=3565318 Score = 167 bits (184), Expect = 2e-35 Identities = 852/1332 (64%), Gaps = 31/1332 (2%) Strand=Plus/Plus Query 517157 TCTTT-AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATT 517215 ||||| ||| || | | ||||||||| || | || | || |||| || | || Sbjct 614209 TCTTTCAGCCTCGTTCACCATTCTCTCGATGTCGTCCTTCGACAATCGACCCTTGTCGTT 614268 Query 517216 AGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAAT 517275 || || || || || || |||| || ||||| ||| ||||| ||| || || || Sbjct 614269 GGTGATGGTGATCTTGTTCTCTTTGCCAGTCGATTTCTCAATGGCAGACACGTTCAGGAT 614328 Query 517276 ACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGG 517335 || || || || | || || || ||||| |||||||| || ||||| | || ||||| Sbjct 614329 TCCGTTAGCGTCGATGTCGAACGTAACTTCGATTTGAGGTACGCCTCTAGGCGCGGGTGG 614388 Query 517336 GATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACC 517395 || || | | | || | || || || || || | || | || || || Sbjct 614389 AATGCCGACGAGCTCGAACTTGCCGAGGAGGTTGTTGTCCCTCGTCATAGCTCTCTCTCC 614448 Query 517396 CTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGA 517455 ||| | | ||| || || ||| |||||||| ||||| || ||||| |||| Sbjct 614449 TTCGTACACTTGAATCAGGACGCCAGGCTGATTATCAGAATAGGTGGTAAACG-TCTGAG 614507 Query 517456 TTT-TTTACAAGGAATTGTTGTGTTTCTATCAAT-AATATTGGTCATAATACCACCTGCT 517513 | | ||| || ||||| ||||| || | || ||| ||| |||| | ||| || || Sbjct 614508 TCTGTTTGGTTGGTATTGTGGTGTTCCTCTTGATCAATGTTG-TCATCACACCGCCGGCA 614566 Query 517514 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 517573 || || | |||||| || ||||| |||||||| | || | || || ||| | || || Sbjct 614567 GTCTCGATACCAAGCGACAGAGGCGTGACATCCAGGAGCAAAAGATCTTGGACTTGCTCC 614626 Query 517574 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 517633 | | || || || || || || | ||| ||||| || || ||||| || || Sbjct 614627 GACTTGTCGCCGTGGAGGATGGCAGCCTGGACAGCTGCACCGTAGGCGACAGCCTCGTCG 614686 Query 517634 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC- 517692 ||||| | | | || |||| ||| || ||||| |||| | ||| |||| ||| | Sbjct 614687 GGATTGATGGACTTGTTCAGTTCTTTGCCGTTGAAGAAATCTTGAAGTAGTT-TCTGAAT 614745 Query 517693 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 517752 ||| || || | | || || || |||| || || ||| ||||| || |||| Sbjct 614746 CTTTGGTATCCTGGTAGAACCACCGACTAGAACGATGCTATGAACCTGGCTCTTGTCCAT 614805 Query 517753 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTC-TAAACAAGTCTGAAC 517811 || | ||| | | || || || ||||| | || ||| | |||| || | | Sbjct 614806 CTTCGCGTCCCGCAGGGCCTTCTCCACCGGTTCCA-ACGTACTCCTGAACAGATCCGCGC 614864 Query 517812 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAA 517869 | || || || || | || || |||| | || | || || || | || |||||||| Sbjct 614865 ATAGCTCCTCAAACCTGGCCCTGGTAACGG--ACGTGTAGAAGTCGACACCCTCGAACAA 614922 Query 517870 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 517929 |||||| | || || | | || ||||| || || | | || || | ||||| Sbjct 614923 AGAATCGATCTCGATGCTGGCCTGCGTCGACGAGCTCAGAGTCCTCTTCGCCCTCTCACA 614982 Query 517930 TGCTGTCCTTAGTCTTCGTAAGG---CTTTTGCTGATTGATTCAAATCTGTTTTATATTT 517986 || || || | | | |||| || ||| | | | ||| ||| | || || || Sbjct 614983 GGCCGTTCTCAAGCGCC-TAAGAGCCCTCTTGTTAGT--ACTCAGGTCTTTCTTGTACTT 615039 Query 517987 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 518046 |||||||| || | ||| | | || | ||||| || || || || || || | Sbjct 615040 CCTCTTGAACTCCTGAACGAAGTGGTTGACCATTCGATTGTCGAAGTCCTCGCCACCGAG 615099 Query 518047 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 518106 | || | || | ||| | | | |||| ||| | || ||||| | | ||||| | Sbjct 615100 ATGTGTGTCGCCAGCCGTTGATTTCACTTCGAAGATGCCGTCTTCGATGGTCAAAATCGA 615159 Query 518107 TACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--TGG 518164 ||||| ||| ||||| |||| || || || | || ||| | || | | || Sbjct 615160 CACATCGAAGGTGCCACCTCCCAGGTCGAAGATCAACACGTTCTTCTC---GCCAGATGT 615216 Query 518165 TTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 518223 ||| ||||| |||||||| || | || || ||||||||||| || || || || | ||| Sbjct 615217 TTTCTTATCGAGACCATAAGCGATCGCCGCCGCAGTTGGTTCGTTGATGATCCTTAGAAC 615276 Query 518224 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 ||| ||||| || || ||| || ||||| |||||||||||||| || || || ||||| Sbjct 615277 ATTCAGACCTGCTATCGCTCCCGCGTCTTTGGTGGCTTGTCTTTGCGAGTCATTGAAATA 615336 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT--GCCGTT 518341 || || || || || ||||| | || || || || | ||| ||||| || ||| Sbjct 615337 CGCTGGTACGGTGATGACGGCGTTGGTAACGGTATTGCCTAAATA--CGCTTCAGCTGTT 615394 Query 518342 TGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG-CTTGGATTC 518400 | ||||| || | | | ||| || || | || ||| |||||| | | ||| | || Sbjct 615395 TCCTTCATCTTCGTCAGTACCATCGACGACACTTCTTC-GGGGAAGAAGGTCTTTGTCTC 615453 Query 518401 ATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCA 518460 | | || || || | | | ||||| |||| | || | || | |||||||| Sbjct 615454 ACCCTTGTACGAAACCTTGATTTTCGGTTTGCCACCATCGTTCACCACCGTGAATGGCCA 615513 Query 518461 GTATTTCATATC 518472 || ||||||||| Sbjct 615514 GTGTTTCATATC 615525 >seq12473 Length=36767 Score = 131 bits (144), Expect = 1e-24 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| |||||||| || ||||||||||| | ||| | ||||||||||| ||| Sbjct 22098 CCATATGCAAGGGCAGCAGCCGTCGGTTCATTAATTACTCTAAGTACATTAAGACCGGCA 22157 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| || || ||||| || || ||||||||||||||||| ||||||||||| |||||| Sbjct 22158 ATTTGACCAGCGTCTTTGGTAGCCTGTCTTTGTGAATCGTTGAAATATGCAGGGACAGTA 22217 Query 518297 ATAACGGCAT 518306 || || |||| Sbjct 22218 ATTACAGCAT 22227 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || |||||||| || || || || ||||||||||||| | |||| |||| | ||| ||| Sbjct 22098 CCATATGCAAGGGCAGCAGCCGTCGGTTCATTAATTACTCTAAGTACATTAAGACCGGCA 22157 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 |||| | ||| || || || ||||| |||| || || |||||||| || |||||| Sbjct 22158 ATTTGACCAGCGTCTTTGGTAGCCTGTCTTTGTGAATCGTTGAAATATGCAGGGACAGTA 22217 Query 322364 ATAACTGCTTTATT 322377 || || || || || Sbjct 22218 ATTACAGCATTCTT 22231 >seq14976 Length=223518 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 ||||| || || || ||||| || || |||| | |||||||||||| ||||| | | Sbjct 189033 AAAATCGTGTTTGTGGGATTCATAGCTACTTGGTTTTTGGCTGCATCGCCAATTAACCTT 188974 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 || | |||||||| | ||||| || || ||||| || ||||| ||||| || || Sbjct 188973 TCCGCTTCTGTAAACGCGACATAACTCGGCGTGGTGCGGTTCCCTTGGTCATTAGCGATG 188914 Query 518645 ATTTCAACTTTACCATT 518661 |||||||| || ||||| Sbjct 188913 ATTTCAACCTTTCCATT 188897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3778313049269008