Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq48246 333 3e-86 seq1 311 1e-79 seq14976 172 7e-38 seq27184 82.4 1e-10 >seq48246 Length=3565318 Score = 333 bits (368), Expect = 3e-86 Identities = 816/1228 (66%), Gaps = 12/1228 (1%) Strand=Plus/Plus Query 6588 TTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATCATTCG 6647 |||| || || | ||||| | || ||||| || ||||| |||| ||||| || || | Sbjct 614211 TTTCAGCCTCGTTCACCATTCTCTCGATGTCGTCCTTCGACAATCGACCCTTGTCGTTGG 614270 Query 6648 TAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATAC 6707 | || || ||||| | ||| || | | || || ||| || |||| || | Sbjct 614271 TGATGGTGATCTTGTTCTCTTTGCCAGTCGATTTCTCAATGGCAGACACGTTCAGGATTC 614330 Query 6708 CATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAA 6767 | || || || | |||||| | || | ||||| ||| || || || |||| ||||| Sbjct 614331 CGTTAGCGTCGATGTCGAACGTAACTTCGATTTGAGGTACGCCTCTAGGCGCGGGTGGAA 614390 Query 6768 TACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTTCACCTT 6827 | || | || || | || || | |||| ||| ||| | | | || |||| Sbjct 614391 TGCCGACGAGCTCGAACTTGCCGAGGAGGTTGTTGTCCCTCGTCATAGCTCTCTCTCCTT 614450 Query 6828 CATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGT-TCT 6886 | || |||| ||| || |||| |||||||| || | || | || ||| Sbjct 614451 CGTACACTTGAATCAGGACGCCAGGCTGATTATCAGAATAGGTGGTAAACGTCTGAGTCT 614510 Query 6887 TTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTT 6946 | || | ||| || || || || ||| || | | ||||| | ||| || ||| Sbjct 614511 GT-TTGGTTGGTATTGTGGTGTTCCTCTTGATCAATGTTGTCATCACACCGCCGGCAGTC 614569 Query 6947 TCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTC 7006 |||| ||||| |||||||| || || |||| ||| || || ||||| || | | || Sbjct 614570 TCGATACCAAGCGACAGAGGCGTGACATCCAGGAGCAAAAGATCTTGGAC----TTGCTC 614625 Query 7007 C--CTTCAC-CCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATC 7062 | ||| | |||| || ||||| || ||||| | || ||||| ||||| ||||| || Sbjct 614626 CGACTTGTCGCCGTGGAGGATGGCAGCCTGGACAGCTGCACCGTAGGCGACAGCCTCGTC 614685 Query 7063 GGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAAT 7122 ||| || || | || ||||||||||| ||||| || |||| | | || ||||| Sbjct 614686 GGGATTGATGGACTTGTTCAGTTCTTTGCCGTTGAAGAAATCTTGAAGTAGTTTCTGAAT 614745 Query 7123 TTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGAT 7182 || || || | || || |||||||| | |||||| || || | || || || Sbjct 614746 CTTTGGTATCCTGGTAGAACCACCGACTAGAACGATGCTATGAACCTGGCTCTTGTCCAT 614805 Query 7183 CTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATT-TACGGAACAAGTCCATAC 7241 ||| | ||| || || | || || || ||||||| || | | | ||||| ||| | Sbjct 614806 CTTCGCGTCCCGCAGGGCCTTCTCCACCGGTTCCA-ACGTACTCCTGAACAGATCCGCGC 614864 Query 7242 ACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACG 7301 | || |||||||| | || | ||||| ||| || ||||| || || || ||| | || | Sbjct 614865 ATAGCTCCTCAAACCTGGCCCTGGTAACGGACGTGTAGAAGTCGACACCCTCGAACAAAG 614924 Query 7302 AATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 |||| || || ||| | | || | || ||| | || | ||| || | |||||| | Sbjct 614925 AATCGATCTCGATGCTGGCCTGCGTCGACGAGCTCAGAGTCCTCTTCGCCCTCTCACAGG 614984 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 |||||| || || | ||| || | | |||| | |||||||| | || | | Sbjct 614985 CCGTTCTCAAGCGCCTAAGAGCCCTCTTGTTAGTACTCAGGTCTTTCTTGTACTTCCTCT 615044 Query 7422 TAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTG 7481 | ||||| | | |||||| | | || ||||| || || ||||| | |||| Sbjct 615045 TGAACTCCTGAACGAAGTGGTTGACCATTCGATTGTCGAAGTCCTCGCCACCGAGATGTG 615104 Query 7482 TATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACAT 7541 | || || || || | ||| ||||| ||||| || |||| ||| | || | ||| |||| Sbjct 615105 TGTCGCCAGCCGTTGATTTCACTTCGAAGATGCCGTCTTCGATGGTCAAAATCGACACAT 615164 Query 7542 CAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTAT 7601 | || || ||||| |||||||| || || | |||||| | ||| | | | ||||||| Sbjct 615165 CGAAGGTGCCACCTCCCAGGTCGAAGATCAACACGTTCTTCTCGCCAGATGTTTTCTTAT 615224 Query 7602 CGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGC 7661 ||||||| || ||||| |||||||| |||||||| || || || | ||| ||||| | Sbjct 615225 CGAGACCATAAGCGATCGCCGCCGCAGTTGGTTCGTTGATGATCCTTAGAACATTCAGAC 615284 Query 7662 CAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGA 7721 | || || | | |||| ||||| || ||||||| |||||| || || || || || || | Sbjct 615285 CTGCTATCGCTCCCGCGTCTTTGGTGGCTTGTCTTTGCGAGTCATTGAAATACGCTGGTA 615344 Query 7722 CCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTT 7781 | || | ||| |||| || || | || || | ||||| ||| || | || ||||| | Sbjct 615345 CGGTGATGACGGCGTTGGTAACGGTATTGCCTAAATACGCTTCAGCTGTTTCCTTCATCT 615404 Query 7782 TGGTAAGAACCATCGATGAAATCTCTTC 7809 | || || |||||||| || | ||||| Sbjct 615405 TCGTCAGTACCATCGACGACACTTCTTC 615432 >seq1 Length=1408590 Score = 311 bits (344), Expect = 1e-79 Identities = 842/1278 (66%), Gaps = 8/1278 (1%) Strand=Plus/Minus Query 6509 TTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCTTTTTCGCGTACTT 6567 ||||| |||| | ||||| ||||| |||||||| || ||| | | | | | ||| Sbjct 65118 TTCATGTTGA-AGCAGTAAGACTCGAGTCCATTCTTAGCAGCGATCGTCTCCTTCTGCTT 65060 Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 || || || |||||| || || || | ||||| | || || |||||||| Sbjct 65059 CTCGTCCTCGCTACGATACTTCTCGGCTTCGTTAACCATTCTCTCGATCTCTTCTTTGCT 65000 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | |||||||| || || || || ||||| | || || | | ||||| | Sbjct 64999 CAGGCGGCCCTTATCGTTGGTGATGGTGATCTTGTTCTCCTTGCCAGTAGATTTATCCAC 64940 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || ||||||||| ||||| || || || | || || | || | || || || Sbjct 64939 CGCGGATACATTCAAGATACCGTTGGCGTCGATGTCAAATGTAACTTCGATCTGAGGAAC 64880 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 || || ||||| | |||||||| | | |||||| |||| | | | |||| ||| | Sbjct 64879 TCCTCTAGGTGCTGGCGGAATACCGCTGAGCTCAAATTTACCTAACAGATTGTTGTCCTT 64820 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 || | | |||||| || || || || | ||| ||| | || |||||||| Sbjct 64819 CGTCATAGCACGTTCTCCCTCGTACACCTGAATCAACACACCCGGCTGATTATCAGCGTA 64760 Query 6868 CGTTGAGAAGATTTGT-TCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| |||| ||| | || | |||||| || || |||||| |||| | | Sbjct 64759 GGTGGTGAAGGTTTGGGTCTGT-TTGGTTGGAATGGTGGTGTTTCTCTTGATAAGGGCAG 64701 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | ||| || ||||| | |||||||| || ||||| ||||| | || | | Sbjct 64700 TCATGACACCGCCAGCCGTTTCAATACCAAGAGAAAGTGGTGTAACGTCGAGAAGCAGTA 64641 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGA-TGGCGGCTTGGACCGTCGCCCCG 7045 | ||||| || ||| | || || || |||| |||||||||| || | || ||| Sbjct 64640 GATCTTGTACTTCCTCGGACTTGTCGCC-GTGAAGAATGGCGGCTTGTACGGCAGCTCCG 64582 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || || || || || || || | || |||| || || ||||| || | ||| Sbjct 64581 TAAGCTACAGCTTCGTCAGGATTGATGGACTTGTTCAACTCCTTTCCGTTGAAGAAGTCC 64522 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || | || || || ||||| || || |||||||| ||||||||||| || | Sbjct 64521 TGCAGCAGCTTCTGGATCTTGGGGATACGCGTGGATCCACCAACCAAAACGATGTCGTGG 64462 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | | || || ||||| | || || || | ||| || || || |||| | | Sbjct 64461 ATCTGTGCCTTGTCCATCTTGGCATCGCGCAGCGATTTCTCTACTGGCTCCAGAGTTCCT 64402 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 | ||| | || || || || || || || || | ||| || || || |||||||| Sbjct 64401 CTGAAAAGATCAGCGCAGAGCTCTTCGAACCGAGCCCTGGTGATCGACGTGTAGAAATCG 64342 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||||| | ||||| || || ||| | | ||| | | |||||| || || ||| Sbjct 64341 ATTCCCTCGTACAGTGAATCGATCTCGATGCTGGCTTGAGTAGACGAAGACAATGTGCGC 64282 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || || || || |||||||||| | ||| || || || || ||| | || | || Sbjct 64281 TTCGCACGTTCGCACGCCGTTCTCAGACGGCGCAGAGCGCGTTTGTTGCTGGTCAGGTCC 64222 Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||||| | |||||| || || || | | ||| || | | | ||||||||| Sbjct 64221 TTCTTGTATTTACGCTTGAATTCCTGAACGAAATGATTTACCATACGGTTGTCGAAATCT 64162 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 || || || | || || || || || || | ||||| || || ||||| |||| || Sbjct 64161 TCGCCGCCAAGATGAGTGTCTCCTGCTGTAGACTTGACCTCGAAAATACCGTCTTCGATC 64102 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 | | | ||| ||||| || || ||||| || |||||||| || || ||||| ||| Sbjct 64101 GTCAGAATCGACACATCGAAGGTGCCACCGCCGAGGTCAAAGATTAGGACGTTGCGCTCG 64042 Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | | | |||||||| || || || || || || || || || || ||||| || ||| Sbjct 64041 TTGGTGGTCTTCTTATCCAGGCCATATGCAATGGCGGCAGCGGTAGGCTCATTGATGATA 63982 Query 7646 CG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATC 7704 || || || ||||| ||| | || ||| | || || || || || || || ||||| || Sbjct 63981 CGTAATAC-GTTCAAGCCTGAGATGGTTCCAGCGTCCTTGGTTGCCTGACGCTGCGAGTC 63923 Query 7705 GTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTC 7764 ||| ||||| || || || || | || || | ||||| | |||||||| |||| ||| Sbjct 63922 GTTGAAGTAAGCAGGCACAGTGATCACGGCATTGGTGACGATTTTACCGAGGTACGCTTC 63863 Query 7765 CGCGATATCTTTCATTTT 7782 || | || |||||||| Sbjct 63862 GGCAGTTTCCTTCATTTT 63845 Score = 89.7 bits (98), Expect = 7e-13 Identities = 131/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 7964 GTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTA 8023 ||||| |||||||||||||| ||| || || || || |||||||| | ||||| | Sbjct 62959 GTGTTGTTGGGGTTCATGGCAACTTGATTTTTGGCTGCATCCCCGATCAACCGTTCGGTG 62900 Query 8024 TTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATT 8083 | |||| || || ||||| || || || ||||| ||||| || || || || || Sbjct 62899 T---CCGTGAATGCAACGTAGCTCGGCGTTGTACGATTTCCTTGATCATTGGCGATGATC 62843 Query 8084 TCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCG 8143 || || ||| || | ||||| ||||| || ||||| || || | |||||||||| Sbjct 62842 TCCACTTTCCCGTGCTGGAACACGCCAACGCAGGAGTACGTGGTGCCAAGATCAATACCG 62783 Query 8144 ATTGC 8148 | ||| Sbjct 62782 ACTGC 62778 >seq14976 Length=223518 Score = 172 bits (190), Expect = 7e-38 Identities = 224/310 (72%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 ||||| || ||||| | | ||| ||| | ||| ||||| || ||||| ||||| || Sbjct 190125 ACTTCGAATATACCGTCGTTAATAGTTAGTATCGATACATCGAAAGTACCGCCACCAAGA 190066 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCC 7621 ||||| || || |||| | | || || | ||||| |||||||| || || ||||| Sbjct 190065 TCAAAGATCAGAACGTGCCTTTCACCGCGTCCCTTCTTGTCGAGACCATAAGCAATAGCG 190006 Query 7622 GCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCT 7681 ||||| || || || ||||| || | || ||||| ||| | ||||| | || ||| Sbjct 190005 GCCGCAGTCGGCTCGTTAATGATCCTTAGGACGTTCAAGCCTGAGATAGTACCGGCGTCT 189946 Query 7682 TTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTG 7741 || || ||||| ||||| |||||||||||||| ||||| ||||| | || |||| ||| Sbjct 189945 TTGGTAGCTTGCCGTTGAGAATCGTTAAAGTACGCCGGCACCGTGATTACAGCGTTTGTG 189886 Query 7742 ACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAA 7801 || || || ||| | ||||||| | || |||||||| || | |||||||| || Sbjct 189885 ACAGATTTTCCCAGAAAGCCTTCCGCGGTTTCCTTCATTTTCGTCAACACCATCGACGAG 189826 Query 7802 ATCTCTTCAG 7811 ||||| |||| Sbjct 189825 ATCTCCTCAG 189816 >seq27184 Length=1455329 Score = 82.4 bits (90), Expect = 1e-10 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||| |||| |||||| ||||| ||||| || || || || |||| ||||||||||| Sbjct 543060 TGTCTCTGCGCATCGTTGAAGTAAGCCGGCACAGTGACCACGGCGTGAGTGACTTTCTTG 543119 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 || | ||||| |||||| | || ||||| || || ||||| | || |||||||| Sbjct 543120 CCCAAATACGCTTCCGCAGTTTCCTTCATCTTACCGAGCACCATAGCGGAGATCTCTTCG 543179 Query 7811 GCCGCAAA 7818 | ||||| Sbjct 543180 GGTGCAAA 543187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634731332557120