Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq18886 96.9 4e-15 >seq18886 Length=112513 Score = 96.9 bits (106), Expect = 4e-15 Identities = 168/242 (69%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 154864 TGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGAC 154923 |||| ||| | ||||| || ||||| || || | || || || || ||| ||| | Sbjct 87299 TGTCTTGTTTAATGATAACGTACCCGTCGACGAACGGCGTTTTCGAGGA-AACGATAGGC 87357 Query 154924 -AGATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 | ||||| ||| ||||| ||| || || || |||||| | |||||||| || | Sbjct 87358 GACATATGCGCGATGGTTCACGACGCGGGGGGCCAAGTATATTTAGATGGAGCTAACATG 87417 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAAC 155042 |||||||| || || || || | || || || || || | ||| | || Sbjct 87418 AATGCACAAGTTGGCCTTTGCCGTCCTGGCGATTACGGCAGCGACGTTTCGCATTTGAAT 87477 Query 155043 TTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGT 155102 ||||||||||| |||||||| || ||||| |||||||| ||||| | ||||||||||| Sbjct 87478 TTACATAAAACTTTCTGTATACCTCATGGCGGTGGAGGACCTGGGATGGGTCCTATAGGA 87537 Query 155103 GT 155104 || Sbjct 87538 GT 87539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578846679589120