Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq16708 190 5e-43 seq21718 118 2e-21 >seq16708 Length=1145218 Score = 190 bits (210), Expect = 5e-43 Identities = 176/223 (79%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||| || ||||| || |||||||| || || || ||||||| ||| || Sbjct 1010110 TCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGT 1010169 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| ||||||||||| || || || |||||||| | |||||||||||| |||||||| || Sbjct 1010170 TCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCC 1010229 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| |||||||| |||||| ||||| || ||||| ||| || || || || Sbjct 1010230 TTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAG 1010289 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | ||| || |||||||| || ||||| || | |||||| Sbjct 1010290 GGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCATT 1010332 Score = 190 bits (210), Expect = 5e-43 Identities = 168/210 (80%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || |||||||| |||||||| ||||||||||| | || || | ||||||||| Sbjct 1010807 ACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCATCTTCG 1010866 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || || || |||||||| |||||||||||||| |||||||| ||||||||||||||| Sbjct 1010867 AGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGA 1010926 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||| || || ||| || || || ||||| | |||||| Sbjct 1010927 ATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTG 1010986 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 |||||||| || || || || | |||||| Sbjct 1010987 CCTGTCAACGTCTTGACAAAAATCTGCATT 1011016 Score = 187 bits (206), Expect = 6e-42 Identities = 168/211 (80%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||||||||| || || || ||||||||||| | || || | |||||||| Sbjct 1011034 AACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCTTC 1011093 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| || || || |||||||| | |||||||||||| |||||||| ||||||||||| || Sbjct 1011094 GAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTG 1011153 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| ||||||||||||||| || || ||| || || || ||||| | |||||| Sbjct 1011154 AATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTT 1011213 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| |||||||| || || || | |||||| Sbjct 1011214 TCCAGTCAAAGTCTTGACAAAAATCTGCATT 1011244 Score = 185 bits (204), Expect = 2e-41 Identities = 174/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||| || ||||||||||| || || || ||||||||||| | || || Sbjct 1011250 TCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGT 1011309 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||||||||| || || || |||||||| | |||||||||||| |||||||| || Sbjct 1011310 GCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCC 1011369 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| |||||||| ||||||||||||||| || || ||| || || || || Sbjct 1011370 TTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAG 1011429 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||| ||||| || || || ||||| | ||||| Sbjct 1011430 GGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Score = 172 bits (190), Expect = 1e-37 Identities = 172/223 (77%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | ||| || ||||||||||| || || || ||||||||||| | || || Sbjct 1010338 TCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGT 1010397 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||||||| || || || |||||||| |||||||||||||| ||||| || || Sbjct 1010398 GCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGTATTCC 1010457 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||||| ||||| || |||||| ||||| || || || ||| || || || || Sbjct 1010458 CTCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAACCTCGAG 1010517 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | |||||| |||||||| || || || || | |||||| Sbjct 1010518 GGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCATT 1010560 Score = 150 bits (166), Expect = 4e-31 Identities = 160/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||||||||| || || || ||||||||||| | || || | ||||| || Sbjct 1010578 AACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCCTC 1010637 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| | ||||||||| || ||||| || || |||||||| || Sbjct 1010638 CAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTGTCCTG 1010697 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| |||||| |||||||| || || ||| || ||||| | || | ||||| Sbjct 1010698 AATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATAGTCTT 1010757 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || ||||| ||||| || || | |||||| Sbjct 1010758 CCCAGTCAACGTTTTCACAAAAATCTGCATT 1010788 Score = 129 bits (142), Expect = 1e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || ||||| || ||||| || || || || ||||| | ||| || | |||||||| Sbjct 1009894 AACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAAAGTGTGCGTCCATCTTC 1009953 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || |||||||| | || ||| ||||| || ||||| |||||||||||||| Sbjct 1009954 TAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCTTCTTTGTCTTG 1010013 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 |||||| || || || || ||||| || || || ||||| | || | ||||| Sbjct 1010014 AATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGACTTCCAATGTGATAGTCTT 1010073 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| ||| || || || | |||||| Sbjct 1010074 CCCAGTCAGAGTCTTAACAAAAATCTGCATT 1010104 >seq21718 Length=958615 Score = 118 bits (130), Expect = 2e-21 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 |||| ||||| || ||||||| ||| || | ||||| || | ||||| || || |||| Sbjct 51081 CTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGA 51140 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCT 195070 | | || ||||| || || || || || |||||||||||||| ||| || || |||| Sbjct 51141 TCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCT 51200 Query 195071 CAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGA 195130 | || ||||| ||| || || || ||||||| ||| || || |||| ||||| |||| Sbjct 51201 CGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGA 51260 Query 195131 ACACTTGCAT 195140 | | ||||| Sbjct 51261 ATATCTGCAT 51270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108762764097656