Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 105 4e-18
seq21718 98.7 6e-16
>seq16708
Length=1145218
Score = 105 bits (116), Expect = 4e-18
Identities = 163/231 (71%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
||||||| | | |||| ||||| |||| || || ||||||||||| |||||||
Sbjct 654041 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCG 654100
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
| | | ||| |||| |||||||| || || || || || | || ||||| || | |
Sbjct 654101 ACAAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAG 654160
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930
| | ||||||||||| || || ||| || || || |||| ||| ||| ||
Sbjct 654161 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTCAC--ATTCTCGATCGTGTCAGAGGCTTC 654218
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || | ||| |||||||| || ||||||||||| || || ||||||||
Sbjct 654219 GACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269
Score = 100 bits (110), Expect = 2e-16
Identities = 162/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||| || ||||| | | ||||| |||| ||| ||| ||||| || || || || |
Sbjct 1010559 TTCCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAG 1010618
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
| || | ||| |||| |||||||| ||||||||||| |||| |||||| || || | |
Sbjct 1010619 AGAGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAG 1010678
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930
| | ||||| ||||| ||| || ||||| || || |||| ||| |||||
Sbjct 1010679 GTATTCCCTCTTTGTCCTGAATTTTGGCCTTGAC--ATTCTCAATCGTATCAGAAGCCTC 1010736
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || | || || || || || || | || |||||||| ||||||||
Sbjct 1010737 GACTTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 1010787
Score = 95.1 bits (104), Expect = 8e-15
Identities = 162/234 (69%), Gaps = 1/234 (0%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||| || |||| | | ||||| |||| ||| ||| ||||| || || || || |
Sbjct 1011243 TTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAG 1011302
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
| || | ||| |||| || || |||||||| || || || | |||||| ||||| | |
Sbjct 1011303 AGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAG 1011362
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | || || ||||| ||| || |||||| | |||| || |||||||
Sbjct 1011363 GAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAA 1011422
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT-ATTC 34985
| |||| |||||| || || || || | ||||| || ||||||||||| ||||
Sbjct 1011423 CCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCATGATTC 1011476
Score = 93.3 bits (102), Expect = 3e-14
Identities = 158/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
||||||| | | |||| ||||| |||| || ||||||||||||||| || || |
Sbjct 654725 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAG 654784
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
| || ||||| |||| || || || || || || || || | || ||||| || | |
Sbjct 654785 ATAGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654844
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | |||||||| || || || ||| ||| | | |||| || || || |
Sbjct 654845 GAATTCCCTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGA 654904
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | ||| || ||||| || ||||||||||| || || ||||||||
Sbjct 654905 CTTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654953
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
||||||| | | |||| |||| |||| ||| || || || ||||| || || |
Sbjct 654497 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 654556
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
| || ||||| |||| || | ||| || || || || || | || ||||| || | |
Sbjct 654557 ATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654616
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTC 34930
| | ||||||||||| || || ||| || || || |||| ||| ||| ||
Sbjct 654617 GAATTCCCTCCTTGTCCTGGATTTTGGCTTTCAC--ATTCTCGATCGTGTCAGAGGCTTC 654674
Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || | ||| |||||||| || ||||||||||| || || ||||||||
Sbjct 654675 GACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654725
Score = 84.2 bits (92), Expect = 1e-11
Identities = 150/217 (69%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 34767 CTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCA 34826
|||| |||| |||| ||| || || || ||||| || || || || ||||| ||
Sbjct 653827 CTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCA 653886
Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886
|| || | ||| || || || || || | || ||||| || | || | |||||||||
Sbjct 653887 TCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTG 653946
Query 34887 TCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTA 34944
|| || || ||| || || || |||| ||| ||| || || || | ||| |
Sbjct 653947 TCCTGGATTTTGGCTTTCAC--ATTCTCGATCGTGTCAGAGGCTTCGACTTCCAAGGTGA 654004
Query 34945 TGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
||||||| || ||||||||||| || || ||||||||
Sbjct 654005 TGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041
Score = 84.2 bits (92), Expect = 1e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
||||||| | | |||| ||||| |||| || || ||||||||||| || || |
Sbjct 654269 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAG 654328
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
| || ||||| |||| || || || || || || || || | || ||||| || | |
Sbjct 654329 ATAGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654388
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | |||||||| || || || ||| ||| | | |||| || || || |
Sbjct 654389 GAATTCCCTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGA 654448
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || | ||| || ||||| || ||||||||||| || || ||||||||
Sbjct 654449 CTTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654497
Score = 82.4 bits (90), Expect = 5e-11
Identities = 164/243 (67%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
||||||| | | |||| |||| |||| ||| || || || ||||| || || |
Sbjct 654953 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 655012
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
| || | ||| |||| || || || || || || || || | || ||||| || | |
Sbjct 655013 AGAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 655072
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | || ||||| || || || ||| ||| | | |||| || || || |
Sbjct 655073 GAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGA 655132
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTAGACT 34992
| || | ||| |||||||| || ||||||||||| |||||||||||||| | ||| ||
Sbjct 655133 CTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCATGGTTGTATACC 655192
Query 34993 TGT 34995
|||
Sbjct 655193 TGT 655195
>seq21718
Length=958615
Score = 98.7 bits (108), Expect = 6e-16
Identities = 138/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851
|||||||||||||||| || |||||| | ||| |||| |||| || ||||| ||||| |
Sbjct 51081 CTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGA 51140
Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911
| | || || || || | || | ||||| ||||| |||||| ||| || ||
Sbjct 51141 TCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCAC--ATT 51198
Query 34912 CT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969
|| || | || ||||| || |||| ||| || ||||| ||||| || || |||||
Sbjct 51199 CTCGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCAC 51258
Query 34970 AAAGATCTGCAT 34981
|| ||||||||
Sbjct 51259 GAATATCTGCAT 51270
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324433529123904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |